Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C2R20_RS14695 Genome accession   NZ_CP026343
Coordinates   2814217..2814732 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 9A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2809217..2819732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2R20_RS14670 ygaZ 2809616..2810353 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  C2R20_RS14675 ygaH 2810343..2810678 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C2R20_RS14680 emrR 2810769..2811299 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C2R20_RS14685 emrA 2811426..2812598 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C2R20_RS14690 emrB 2812615..2814153 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C2R20_RS14695 luxS 2814217..2814732 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C2R20_RS14700 gshA 2814882..2816438 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C2R20_RS14705 yqaA 2816511..2816939 (-) 429 WP_001287454.1 YqaA family protein -
  C2R20_RS14710 yqaB 2816936..2817502 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C2R20_RS14740 csrA 2818960..2819145 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=225548 C2R20_RS14695 WP_001130211.1 2814217..2814732(-) (luxS) [Escherichia coli strain 9A]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=225548 C2R20_RS14695 WP_001130211.1 2814217..2814732(-) (luxS) [Escherichia coli strain 9A]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment