Detailed information NTG0225537

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: C2R20_RS11060
• Genome accession: NZ_CP026343
• Coordinates: 2082755..2084182 (+)
• Length: 475 a.a.
• NCBI ID: WP_000980589.1
• Uniprot ID: P04995
• Organism: Escherichia coli strain 9A
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2077755..2089182

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2R20_RS11025	yeeW	2077939..2078133 (+)	195	WP_000988600.1	DUF5983 family protein	-
C2R20_RS24345	-	2078179..2078259 (+)	81	Protein_2032	hypothetical protein	-
C2R20_RS11030	-	2078548..2078676 (-)	129	Protein_2033	transposase domain-containing protein	-
C2R20_RS11035	-	2078748..2078930 (+)	183	WP_001016348.1	EutP/PduV family microcompartment system protein	-
C2R20_RS11040	tmaR	2079031..2079360 (-)	330	WP_000450409.1	DUF496 family protein	-
C2R20_RS11045	yeeA	2079532..2080590 (-)	1059	WP_001200891.1	FUSC family protein	-
C2R20_RS11050	sbmC	2080788..2081261 (-)	474	WP_001105415.1	DNA gyrase inhibitor SbmC	-
C2R20_RS11055	dacD	2081380..2082546 (-)	1167	WP_000830156.1	serine-type D-Ala-D-Ala carboxypeptidase DacD	-
C2R20_RS11060	sbcB	2082755..2084182 (+)	1428	WP_000980589.1	exodeoxyribonuclease I	Machinery gene
C2R20_RS11065	tsuB	2084225..2084452 (-)	228	WP_000234896.1	thiosulfate utilization sulfurtransferase TsuB/YeeD	-
C2R20_RS11070	tsuA	2084466..2085524 (-)	1059	WP_000492339.1	thiosulfate utilization transporter TsuA/YeeE	-
C2R20_RS11075	plaP	2085703..2087061 (-)	1359	WP_000019197.1	putrescine/proton symporter PlaP	-
C2R20_RS11080	yoeI	2087051..2087113 (-)	63	WP_010723108.1	membrane protein YoeI	-
C2R20_RS11085	yeeY	2087328..2088257 (-)	930	WP_000803351.1	LysR substrate-binding domain-containing protein	-
C2R20_RS11090	yeeZ	2088303..2089127 (-)	825	WP_000754737.1	SDR family oxidoreductase	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54500.81 Da
• Isoelectric Point: 5.4700

>NTDB_id=225537 C2R20_RS11060 WP_000980589.1 2082755..2084182(+) (sbcB) [Escherichia coli strain 9A]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide

• Length: 1428 bp

>NTDB_id=225537 C2R20_RS11060 WP_000980589.1 2082755..2084182(+) (sbcB) [Escherichia coli strain 9A]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (13-188)

• Exonuclease C-terminal (ExoI_SH3) (212-472)

3D structure

• PDB: 1FXX
• PDB: 2QXF
• PDB: 3C94
• PDB: 3C95
• PDB: 3HL8
• PDB: 3HP9
• PDB: 4HCB
• PDB: 4HCC
• PDB: 4JRP
• PDB: 4JRQ
• PDB: 4JS4
• PDB: 4JS5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	59.149	98.947	0.585