Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VV1_RS14660 Genome accession   NC_004459
Coordinates   3157597..3158997 (-) Length   466 a.a.
NCBI ID   WP_011149911.1    Uniprot ID   A0AAN1PPC9
Organism   Vibrio vulnificus CMCP6     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152597..3163997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS14625 (VV1_3084) moaE 3153172..3153627 (-) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -
  VV1_RS14630 (VV1_3085) moaD 3153629..3153874 (-) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  VV1_RS14635 (VV1_3086) moaC 3153871..3154350 (-) 480 WP_011080887.1 cyclic pyranopterin monophosphate synthase MoaC -
  VV1_RS14640 (VV1_3087) moaB 3154361..3154873 (-) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  VV1_RS14645 (VV1_3088) moaA 3154954..3155943 (-) 990 WP_039553216.1 GTP 3',8-cyclase MoaA -
  VV1_RS14650 (VV1_3089) - 3156259..3157149 (+) 891 WP_011080890.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  VV1_RS14655 (VV1_3090) luxU 3157250..3157597 (-) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  VV1_RS14660 (VV1_3091) luxO 3157597..3158997 (-) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VV1_RS14665 (VV1_3092) uvrB 3159271..3161301 (-) 2031 WP_011080893.1 excinuclease ABC subunit UvrB -
  VV1_RS14670 (VV1_3251) - 3161400..3161585 (-) 186 WP_011080894.1 hypothetical protein -
  VV1_RS14680 (VV1_3093) rsxA 3162183..3162761 (+) 579 WP_011080895.1 electron transport complex subunit RsxA -
  VV1_RS14685 (VV1_3094) rsxB 3162763..3163359 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52120.68 Da        Isoelectric Point: 6.2540

>NTDB_id=22553 VV1_RS14660 WP_011149911.1 3157597..3158997(-) (luxO) [Vibrio vulnificus CMCP6]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
VQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=22553 VV1_RS14660 WP_011149911.1 3157597..3158997(-) (luxO) [Vibrio vulnificus CMCP6]
ATGCAACAAATAACGACAACGAAACAGCGTTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGACGTGACGCGATAGACAGTCTAAAACATCGCATTC
CAGATCTTATTCTGCTGGATTTACGTCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGTCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCCGTTGAAGCAATGCGACATGGGTCTCAGGATTT
TCTTATCAAGCCATGCGAAGCGGATCGCTTGAGGGTCACGGTAAACAACGCTATCCGCAAAGCGAGTAAATTGAAGAATG
ATGCGGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTATCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATT
GACTCCGCGGCGAGCAGTAAAGCAAGCATCTTTATCACAGGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCGGCCAGTCGACGTGGAGACAAGCCATTTATCGCGATTAACTGTGCTGCAATTCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGTCATGTCAAAGGTGCGTTTACCGGCGCTGCGACCGATCGCCAAGGGGCGGCAGAGCTCGCTGATGGGGGC
ACACTTTTCCTGGATGAGTTGTGTGAAATGGACCTGGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTAGGCTCTTCGAAAATGAAGAGTGTTGACGTGCGTTTTGTGTGCGCGACAAACCGAGACCCCTGGAAAGAGG
TACAAGAAGGGCGCTTTCGCGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGTTACATGTCACACGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATAGATTTAACGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGCTGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGT
GTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACAGAGAAACTGGCGATTGAACA
AGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCCGCTGGCTATCTGGATGTCAGCCCGTCAACAATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.714

96.137

0.824

Multiple sequence alignment