Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C2R20_RS02580 Genome accession   NZ_CP026343
Coordinates   494405..495010 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 9A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 489405..500010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2R20_RS02545 rsmS 490110..490271 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  C2R20_RS02550 priC 490285..490812 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  C2R20_RS02555 ybaN 490882..491259 (+) 378 WP_001188905.1 DUF454 family protein -
  C2R20_RS02565 apt 491412..491963 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  C2R20_RS02570 dnaX 492092..494023 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  C2R20_RS02575 ybaB 494076..494405 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  C2R20_RS02580 recR 494405..495010 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  C2R20_RS02585 htpG 495120..496994 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  C2R20_RS02595 adk 497175..497819 (+) 645 WP_001220233.1 adenylate kinase -
  C2R20_RS02600 hemH 498055..499017 (+) 963 WP_001250103.1 ferrochelatase -
  C2R20_RS02605 aes 499014..499973 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=225517 C2R20_RS02580 WP_001195025.1 494405..495010(+) (recR) [Escherichia coli strain 9A]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=225517 C2R20_RS02580 WP_001195025.1 494405..495010(+) (recR) [Escherichia coli strain 9A]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment