Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VV1_RS07635 Genome accession   NC_004459
Coordinates   1581786..1582304 (+) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus CMCP6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576786..1587304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS07625 (VV1_1606) gshA 1579527..1581092 (+) 1566 WP_043920940.1 glutamate--cysteine ligase -
  VV1_RS07630 (VV1_1607) - 1581130..1581735 (+) 606 WP_223370886.1 hypothetical protein -
  VV1_RS07635 (VV1_1608) luxS 1581786..1582304 (+) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  VV1_RS07640 (VV1_1609) - 1582394..1583671 (-) 1278 WP_011079538.1 CNNM domain-containing protein -
  VV1_RS07645 (VV1_1610) - 1583758..1584552 (-) 795 WP_011079539.1 inner membrane protein YpjD -
  VV1_RS07650 (VV1_1612) ffh 1584766..1586142 (+) 1377 WP_011079540.1 signal recognition particle protein -
  VV1_RS07655 (VV1_1615) rpsP 1586417..1586665 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  VV1_RS07660 (VV1_1616) rimM 1586681..1587229 (+) 549 WP_011079542.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=22540 VV1_RS07635 WP_011079537.1 1581786..1582304(+) (luxS) [Vibrio vulnificus CMCP6]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=22540 VV1_RS07635 WP_011079537.1 1581786..1582304(+) (luxS) [Vibrio vulnificus CMCP6]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTGGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGCGGTACCGCAGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCACAAAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAATGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment