Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   B5D77_RS00405 Genome accession   NZ_CP020664
Coordinates   93856..95496 (+) Length   546 a.a.
NCBI ID   WP_008201920.1    Uniprot ID   -
Organism   Microcystis sp. MC19     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 88856..100496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D77_RS00390 (B5D77_00400) - 89886..90146 (-) 261 WP_369751907.1 hypothetical protein -
  B5D77_RS00395 (B5D77_00405) - 90162..91025 (-) 864 WP_008201924.1 formylglycine-generating enzyme family protein -
  B5D77_RS00400 (B5D77_00410) - 91201..93627 (-) 2427 WP_008201923.1 dynamin-like GTPase family protein -
  B5D77_RS00405 (B5D77_00415) comA 93856..95496 (+) 1641 WP_008201920.1 phospholipase D-like domain-containing protein Machinery gene
  B5D77_RS00410 (B5D77_00420) - 95538..95849 (-) 312 WP_002783106.1 MgPME-cyclase complex family protein -
  B5D77_RS00415 (B5D77_00425) - 95917..96639 (-) 723 WP_172456615.1 pyridoxine 5'-phosphate synthase -
  B5D77_RS00420 (B5D77_00430) - 96699..97043 (-) 345 WP_106909931.1 YbaB/EbfC family nucleoid-associated protein -
  B5D77_RS00425 - 97097..97276 (-) 180 WP_253860445.1 hypothetical protein -
  B5D77_RS00430 (B5D77_00435) - 97292..97636 (-) 345 WP_106909932.1 YbaB/EbfC family nucleoid-associated protein -
  B5D77_RS00435 (B5D77_00440) - 97800..99092 (+) 1293 WP_008201899.1 DUF4377 domain-containing protein -
  B5D77_RS00440 (B5D77_00445) - 99360..100181 (-) 822 WP_008201896.1 hypothetical protein -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 61673.26 Da        Isoelectric Point: 9.3503

>NTDB_id=225336 B5D77_RS00405 WP_008201920.1 93856..95496(+) (comA) [Microcystis sp. MC19]
MWAKMAIDKWRLKKIRTMGQLGFLLGTVFLLGGCHSLNVIPNRPQPLPQDQYIQVYFNHNQAQNSNYTDPYRQINRQGDN
LEQVIIDHINSAKISIDLAVQELRLPAIAQALVERQQQGIKVRVILENIYNKPINSLAKNQEQSSDREQERYQNLFDLVD
INRDGKLTPEEIAQRDAITILKKAGIPLIDDSADRSKGSGLMHHKFMVIDNYTTLISSANYTLSDIHGDFSNTQTVGNAN
HLLVITNPPLARAFQKEFNLMWGREDQHKFGLDKPQRKPQTILIGNSILTVKFSPDSTAYPWAITSNGLIGETLNKAKKS
VNLALFVFTEQPLANILAQRHQKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVPDLARGD
KLHHKFGLIDDKIVITGSHNWSRAANHQNDEALVIIDNPTVAAHFDREFQYLYRTAKLGLPETIKNRIEQDRKNCPQSVT
IKSDRLINLNTATKEELDSLPGISGKLAEKIIAARQQNPFTSLEDLDRVSGIGRGKINKLQGKVSW

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=225336 B5D77_RS00405 WP_008201920.1 93856..95496(+) (comA) [Microcystis sp. MC19]
ATGTGGGCAAAAATGGCAATAGATAAATGGAGATTAAAAAAAATTCGGACTATGGGACAGTTAGGATTTTTGTTAGGGAC
AGTTTTTCTTTTGGGTGGTTGTCATTCTCTGAATGTTATCCCAAATCGTCCGCAACCCTTGCCCCAAGATCAATACATTC
AAGTCTATTTTAATCATAATCAAGCCCAGAATTCAAATTATACCGATCCCTATCGCCAAATTAATCGCCAGGGGGACAAT
CTAGAACAGGTTATTATTGATCATATCAACTCGGCAAAAATTTCGATCGATCTAGCAGTGCAAGAGTTACGTTTACCCGC
CATCGCTCAAGCTTTAGTGGAGCGTCAGCAACAGGGAATTAAAGTTAGGGTTATCCTCGAAAACATTTACAATAAACCTA
TTAATAGTTTAGCCAAAAACCAAGAACAATCAAGCGATCGAGAACAGGAACGTTATCAAAATCTTTTTGATTTAGTTGAT
ATAAATCGAGATGGTAAATTAACTCCAGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGCATTCC
CCTAATTGATGATAGCGCTGATCGCTCAAAAGGTAGCGGTTTAATGCACCATAAATTCATGGTTATTGATAATTACACTA
CTTTAATCAGTTCAGCTAACTACACCTTAAGTGATATTCATGGAGACTTTTCTAATACCCAAACTGTTGGGAATGCCAAT
CACTTATTAGTAATTACTAATCCCCCACTAGCTAGAGCTTTTCAAAAAGAATTTAATCTGATGTGGGGAAGGGAAGATCA
GCATAAATTTGGCTTAGATAAACCCCAGAGAAAACCGCAAACAATCCTTATCGGTAATAGTATTCTGACGGTAAAATTTT
CCCCCGATTCTACCGCTTATCCCTGGGCAATTACTAGCAATGGTCTGATCGGTGAAACTTTAAATAAAGCTAAAAAATCC
GTGAATTTAGCCCTGTTTGTCTTTACGGAACAGCCTTTAGCTAATATTCTCGCTCAACGACATCAAAAAGGGATAGAAAT
TAAAGCTTTAATTGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATA
AATGTCGTTATGAACCAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTCCCGATCTAGCCCGGGGAGAT
AAATTACACCATAAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAGAGCCGCTAACCA
TCAAAACGATGAAGCTTTAGTGATTATCGATAATCCCACCGTTGCCGCTCATTTCGATCGAGAATTTCAATATCTGTACC
GTACCGCTAAATTAGGACTGCCGGAAACTATTAAAAATCGGATCGAACAGGATAGAAAAAACTGCCCCCAATCTGTAACA
ATTAAAAGCGATCGCTTAATTAATTTAAACACCGCCACAAAAGAAGAATTAGATAGTTTACCCGGTATCAGTGGCAAATT
AGCTGAAAAAATTATCGCAGCCCGGCAACAAAACCCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTC
GGGGAAAAATTAACAAGCTGCAAGGCAAAGTTAGCTGGTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(312-452)

PLD-like domain (PLDc_2)

(85-262)

Helix-hairpin-helix motif (HHH_3)

(485-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

52.158

97.619

0.509

Multiple sequence alignment