Detailed information NTG0022526

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VV1_RS06450
• Genome accession: NC_004459
• Coordinates: 1336690..1337697 (-)
• Length: 335 a.a.
• NCBI ID: WP_011079334.1
• Uniprot ID: -
• Organism: Vibrio vulnificus CMCP6
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1331690..1342697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV1_RS06420 (VV1_1351)	zapB	1331814..1332056 (-)	243	WP_011079328.1	cell division protein ZapB	-
VV1_RS06425 (VV1_1352)	rraA	1332278..1332799 (-)	522	WP_011079329.1	ribonuclease E activity regulator RraA	-
VV1_RS06430 (VV1_1353)	-	1332875..1333792 (-)	918	WP_011079330.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VV1_RS06435 (VV1_1355)	hslU	1333958..1335289 (-)	1332	WP_011079331.1	HslU--HslV peptidase ATPase subunit	-
VV1_RS06440 (VV1_1356)	hslV	1335317..1335871 (-)	555	WP_011079332.1	ATP-dependent protease subunit HslV	-
VV1_RS06445 (VV1_1357)	-	1336023..1336580 (-)	558	WP_011151294.1	SPOR domain-containing protein	-
VV1_RS06450 (VV1_1358)	cytR	1336690..1337697 (-)	1008	WP_011079334.1	DNA-binding transcriptional regulator CytR	Regulator
VV1_RS06455 (VV1_1359)	priA	1337926..1340130 (-)	2205	WP_011079335.1	primosomal protein N'	-
VV1_RS06460 (VV1_1360)	rpmE	1340411..1340632 (+)	222	WP_011079336.1	50S ribosomal protein L31	-
VV1_RS06465 (VV1_1361)	-	1340911..1342188 (+)	1278	WP_011079337.1	malic enzyme-like NAD(P)-binding protein	-
VV1_RS06470 (VV1_1362)	metJ	1342275..1342592 (-)	318	WP_011079338.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36842.38 Da
• Isoelectric Point: 6.4904

>NTDB_id=22526 VV1_RS06450 WP_011079334.1 1336690..1337697(-) (cytR) [Vibrio vulnificus CMCP6]
MATMKDVAQLAGVSTATVSRALMNPDKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESRTIVAIVPDICDPYYTEIIRG
IEDAAIEQGYLVLLGDSGQQKRRESSLVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPDLELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPKSAALCQFRQQGYQQALRRAGITMNPQYCVESEFSFEGGAKAIRHLLEMNDAPTA
VFCHCDTMAIGAIQEAKKLGFRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDIHSGSRLLE
TKLVVRGSAAPPGLR

Nucleotide

• Length: 1008 bp

>NTDB_id=22526 VV1_RS06450 WP_011079334.1 1336690..1337697(-) (cytR) [Vibrio vulnificus CMCP6]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGAGTTTCAACGGCAACGGTTTCGAGAGCGCTGATGAATCCAGACAA
AGTATCCGCCACAACGCGTAAGCGTGTGGAAGATGCAGTGTTGGAAGCTGGTTATTCCCCAAACTCGCTGGCACGCAATT
TACGCCGCAACGAGTCACGCACTATCGTCGCGATCGTTCCTGACATTTGTGATCCTTACTACACAGAGATCATTCGTGGC
ATTGAAGATGCCGCCATTGAACAGGGATATTTGGTTCTACTCGGTGACAGCGGCCAACAAAAGCGCCGTGAAAGCTCACT
CGTCAATCTCGTTTTTACCAAGCAAGCGGATGGTATGCTGTTGCTCGGTACCGACTTACCGTTTGATGTGAGCAAGCCAG
AACAGAAAAATCTTCCTCCGATGGTCATGGCTTGCGAGTTCGCCCCCGATCTCGAACTGCCGACGGTTCATATCGATAAC
TTGACCTCAGCATTTGAAGCGGTGAACTACCTGACCCAATTGGGCCACAAACGCATCGCCCAAATTTCAGGGCCAAAATC
CGCAGCACTTTGTCAGTTTAGACAACAAGGCTATCAACAAGCTTTGCGCCGTGCAGGCATCACAATGAACCCACAATACT
GTGTTGAGTCTGAGTTCTCTTTTGAAGGTGGGGCGAAAGCGATCCGTCATCTGCTAGAAATGAATGACGCGCCAACTGCC
GTTTTCTGCCATTGTGACACCATGGCTATCGGGGCGATTCAAGAAGCGAAAAAATTGGGCTTCCGAGTACCGCAAGATCT
GTCGATTGTCGGCTTCGATGACATTCAGTTTGCCCAATATTGCGATCCTCCACTAACCACCATCTCACAGCCACGCTATG
AGATTGGTCGTCAAGCGATGCTGATGATGTTAGAGCTGCTGAAAGGACATGACATTCACAGTGGCTCACGCTTACTTGAA
ACCAAATTGGTGGTTCGTGGTAGCGCAGCGCCTCCGGGCTTACGCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	89.759	99.104	0.89
cytR	Vibrio cholerae C6706	88.253	99.104	0.875