Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   B7P02_RS24210 Genome accession   NZ_CP020645
Coordinates   5138170..5139609 (-) Length   479 a.a.
NCBI ID   WP_003818176.1    Uniprot ID   -
Organism   Bordetella bronchiseptica strain I943     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5133170..5144609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7P02_RS24185 (B7P02_24165) - 5134252..5134935 (+) 684 WP_003815897.1 hypothetical protein -
  B7P02_RS24190 (B7P02_24170) bfr 5135017..5135493 (-) 477 WP_003815898.1 bacterioferritin -
  B7P02_RS24195 (B7P02_24175) - 5135832..5136761 (-) 930 WP_033453020.1 DMT family transporter -
  B7P02_RS24200 (B7P02_24180) - 5136869..5137747 (+) 879 WP_033446870.1 LysR substrate-binding domain-containing protein -
  B7P02_RS24205 (B7P02_24185) - 5137775..5138077 (-) 303 WP_003815905.1 (2Fe-2S)-binding protein -
  B7P02_RS24210 (B7P02_24190) rpoN/rpoN1 5138170..5139609 (-) 1440 WP_003818176.1 RNA polymerase factor sigma-54 Machinery gene
  B7P02_RS24215 (B7P02_24195) - 5139608..5140255 (+) 648 WP_003818180.1 hypothetical protein -
  B7P02_RS24220 (B7P02_24200) leuA 5140682..5142388 (+) 1707 WP_003818182.1 2-isopropylmalate synthase -
  B7P02_RS24225 (B7P02_24205) - 5142440..5143723 (-) 1284 WP_004565898.1 amidase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52322.51 Da        Isoelectric Point: 4.8131

>NTDB_id=225125 B7P02_RS24210 WP_003818176.1 5138170..5139609(-) (rpoN/rpoN1) [Bordetella bronchiseptica strain I943]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAP
DTELRLDEMPGSGGVHPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDVALCGLLIDELDENGYLDSPLEEILTWLPAE
AQADLDELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALILRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVAQAIVAHQQAFFSQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVATDGGDATSATAVQAVIRQLVADEDRGKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAQAAGR

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=225125 B7P02_RS24210 WP_003818176.1 5138170..5139609(-) (rpoN/rpoN1) [Bordetella bronchiseptica strain I943]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCGTCCTGGTCAACATTTGACGTTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGATCCGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GATACCGAACTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTCCATCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCGGACACCCTGCGCGAGCATCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCCCCGCGCGATGTGGCGCTGTGCG
GTCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACATGGCTGCCGGCCGAG
GCGCAGGCCGACCTGGACGAGTTGCGCGCGGCGCTGGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGG
CCTGTGCGCGGCGCATCTGTGCGCAGCATCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCCGCGCACGCGCTGATCCTGCGCCTGGAGCCCCGGCCGGGCCGTGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGCACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCTGTCG
TGCCGCGGCTGCACGTCAATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAGCTGCAGCAGGCGCGCTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGTTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCACGGGCGACGACGCAGAAGTACATGCTCACACCGTTCGGCACGCTGGAGCTCAAGCGC
TTCTTCGGCGCGGGCGTGGCCACCGACGGCGGCGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGCTGGT
GGCCGACGAGGATCGCGGCAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATCGCTC
GCCGTACGGTGGCCAAGTACCGCGAGGCGCTGCGTATCGCGCCCGCGACGCTACGCAAGGCCCAGGCGGCGGGTCGTTAG

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-473)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.221

100

0.509

Multiple sequence alignment