Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   C1N51_RS02215 Genome accession   NZ_CP026315
Coordinates   485280..488660 (-) Length   1126 a.a.
NCBI ID   WP_199770601.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 480280..493660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS02190 (C1N51_02190) - 480568..480996 (+) 429 WP_005382194.1 HIT family protein -
  C1N51_RS02195 (C1N51_02195) - 481147..481668 (+) 522 WP_077201011.1 YqhA family protein -
  C1N51_RS02200 (C1N51_02200) - 481778..482008 (-) 231 WP_005426709.1 FeoC-like transcriptional regulator -
  C1N51_RS02205 (C1N51_02205) feoB 482005..484281 (-) 2277 WP_103410149.1 Fe(2+) transporter permease subunit FeoB -
  C1N51_RS02210 (C1N51_02210) - 484281..484508 (-) 228 WP_103410150.1 FeoA family protein -
  C1N51_RS02215 (C1N51_02215) tfoS 485280..488660 (-) 3381 WP_199770601.1 AraC family transcriptional regulator Regulator
  C1N51_RS02220 (C1N51_02220) znuA 488873..489754 (-) 882 WP_038892099.1 zinc ABC transporter substrate-binding protein ZnuA -
  C1N51_RS02225 (C1N51_02225) znuC 489833..490621 (+) 789 WP_038892101.1 zinc ABC transporter ATP-binding protein ZnuC -
  C1N51_RS02230 (C1N51_02230) znuB 490614..491399 (+) 786 WP_045377675.1 zinc ABC transporter permease subunit ZnuB -
  C1N51_RS02235 (C1N51_02235) sucD 491532..492404 (-) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  C1N51_RS02240 (C1N51_02240) sucC 492404..493570 (-) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 127010.43 Da        Isoelectric Point: 6.0319

>NTDB_id=225077 C1N51_RS02215 WP_199770601.1 485280..488660(-) (tfoS) [Vibrio campbellii strain BoB-90]
MLRQIALLFWAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGAQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGPDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQMTFPYLQVIAGKTIDHITADGPNRLWVSSGYQLFNIDAVNQAMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTVPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVVQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLIGLDSR
FTVLKPWYLSKLAISGFTLAVIAVLALLMYWRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPIDVDSATQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEISWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSL

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=225077 C1N51_RS02215 WP_199770601.1 485280..488660(-) (tfoS) [Vibrio campbellii strain BoB-90]
TTGCTGCGCCAAATAGCCCTACTTTTTTGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGAACTTTTATTGCAGCGAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGCCAAACCACATTGCCAAAATCCGGTAGCTTTCTCAGAAAC
AAAGTAGAGCAGCTGGCTTACCACAAAGGTTCATTTTGGACATTTATTGAAAACGAGGTTTATCAAACTTACCCGAACCA
AGAACGTCGTTTAGTCTTTAGCCTCAACCCTGGCTCTCAGATCCGTAAGATTGGTTCATCCGGAAACTATATTTGGGTCA
GTGATGGTGCGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAATTCCTTTTCTCTATTGCAGCTCTATCAGCAT
AGCAATAACAGTTACGTCTATATTAACGACGCTATCTTTGTCGAAACCAAGTGGGCGTTGGCGACAACTTCAGGCGTATA
CCTATCAGAGGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATCGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTCGGCACTTTAAAAGGCGCGTTGATATTTAATATCTATGAGCCAGGCAAGCCTGTTATTCGAATT
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTAGAACTAGAGCTCGCTAGCACCAAAATTTACTCGT
TGCTGAACGATAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGCAGTTATGACCAGCAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGTGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAACAATGGCAGCATTACCGATGTGTTAAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAGAGGCTCTGGGTTGCCACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGATGACATTCCCTTACCTGCAAGTCATCGCAGGCAAGACAATCGACCATATTACCGCTGATGGCCCCAATCGCCT
TTGGGTATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAATCAGGCTATGAGAAATTTTGGCAGCGAATGGTTAG
TGAGTAAGTTCTTACCCGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCACGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGCTCGCAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCGTTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTATCTGGACAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAACGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTTTCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGGTGCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGATCGTCCCTGAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGATAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTTAATTCTGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTCTGATTGGATTAGATTCCAGA
TTTACAGTGCTTAAACCATGGTATCTATCGAAGTTGGCCATATCGGGTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAATGTATTGGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGCTAAAAACCAATCAGC
TGCGCCATCAAAGTCGAGTGTTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTATTGATGTGGATTCGGCAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGTATTTCATTAGAGAGCTTTAACCTCGATGTCATCTTTAACAGCATCTTTGCCAACATCAT
CAAGCGCTCGTTCCGGGGGCAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGCCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGCCATTTATCGATGTTCACTTCTGATGCTCAAAATAAAATAGAGATTTCGTGGCC
ATGTGCTCAAGAGCCAAGCCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCTGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGTG
GCTTCAATGACCCATCCTACTTTAGCCAGAAGTTTAAATTACACTTTGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCTATAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.485

100

0.395