Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C2U48_RS20550 Genome accession   NZ_CP026202
Coordinates   3846540..3847055 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ECONIH5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3841540..3852055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U48_RS20505 (C2U48_20490) csrA 3842127..3842312 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C2U48_RS20535 (C2U48_20520) yqaB 3843770..3844336 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C2U48_RS20540 (C2U48_20525) yqaA 3844333..3844761 (+) 429 WP_001287454.1 YqaA family protein -
  C2U48_RS20545 (C2U48_20530) gshA 3844834..3846390 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C2U48_RS20550 (C2U48_20535) luxS 3846540..3847055 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C2U48_RS20555 (C2U48_20540) emrB 3847119..3848657 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C2U48_RS20560 (C2U48_20545) emrA 3848674..3849846 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C2U48_RS20565 (C2U48_20550) emrR 3849973..3850503 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C2U48_RS20570 (C2U48_20555) ygaH 3850594..3850929 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  C2U48_RS20575 (C2U48_20560) ygaZ 3850919..3851656 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=225047 C2U48_RS20550 WP_001130211.1 3846540..3847055(+) (luxS) [Escherichia coli strain ECONIH5]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=225047 C2U48_RS20550 WP_001130211.1 3846540..3847055(+) (luxS) [Escherichia coli strain ECONIH5]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment