Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   B7P03_RS09835 Genome accession   NZ_CP020618
Coordinates   1984333..1985049 (-) Length   238 a.a.
NCBI ID   WP_002455088.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. hominis strain K1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1979333..1990049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7P03_RS09815 (B7P03_09740) - 1980011..1980235 (+) 225 WP_002448268.1 sulfurtransferase TusA family protein -
  B7P03_RS09820 (B7P03_09745) - 1980346..1981580 (+) 1235 Protein_1929 ammonium transporter -
  B7P03_RS11850 - 1981686..1981753 (+) 68 Protein_1930 LacI family DNA-binding transcriptional regulator -
  B7P03_RS09825 (B7P03_09750) - 1981835..1983322 (+) 1488 WP_087437176.1 sucrose-6-phosphate hydrolase -
  B7P03_RS09830 (B7P03_09755) - 1983323..1984282 (+) 960 WP_087437175.1 carbohydrate kinase family protein -
  B7P03_RS09835 (B7P03_09760) agrA 1984333..1985049 (-) 717 WP_002455088.1 quorum-sensing response regulator AgrA Regulator
  B7P03_RS09840 (B7P03_09765) agrC 1985062..1986351 (-) 1290 WP_049417671.1 quorum-sensing sensor histidine kinase AgrC -
  B7P03_RS09845 (B7P03_09770) agrD 1986375..1986515 (-) 141 WP_049417668.1 cyclic lactone autoinducer peptide AgrD -
  B7P03_RS09850 (B7P03_09775) - 1986518..1987084 (-) 567 WP_087437174.1 accessory gene regulator AgrB -
  B7P03_RS09855 (B7P03_09780) - 1987786..1988571 (-) 786 WP_071859786.1 carbon-nitrogen family hydrolase -
  B7P03_RS09860 (B7P03_09785) - 1988702..1989325 (-) 624 WP_087437173.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.75 Da        Isoelectric Point: 5.2104

>NTDB_id=225047 B7P03_RS09835 WP_002455088.1 1984333..1985049(-) (agrA) [Staphylococcus hominis subsp. hominis strain K1]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=225047 B7P03_RS09835 WP_002455088.1 1984333..1985049(-) (agrA) [Staphylococcus hominis subsp. hominis strain K1]
ATGAAAATATTCATTTGTGAAGACGATGTGAAACAACGTGAAAATATGGTTTCAATTATTAACAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTGGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGGAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTAAAAACGCGAATAATAGATTGCATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGCAATGTTGAAACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCACATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGTTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGCCATAATATCGATTCAGTCG
ATTCTAAAGAACGAATTGTAACTTTCAGAAATGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874

Multiple sequence alignment