Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RS_RS13130 Genome accession   NC_003295
Coordinates   2822729..2823238 (-) Length   169 a.a.
NCBI ID   WP_011002531.1    Uniprot ID   Q8XW55
Organism   Ralstonia pseudosolanacearum GMI1000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2817729..2828238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS_RS13120 (RS00920) - 2818983..2819813 (-) 831 WP_011002529.1 DUF932 domain-containing protein -
  RS_RS13125 (RS00923) - 2820119..2822662 (+) 2544 WP_242413363.1 ATP-binding protein -
  RS_RS13130 (RS00924) radC 2822729..2823238 (-) 510 WP_011002531.1 RadC family protein Machinery gene
  RS_RS13135 (RS00925) - 2823536..2824603 (-) 1068 WP_011002532.1 PDDEXK nuclease domain-containing protein -
  RS_RS13140 (RS00926) - 2824600..2825802 (-) 1203 WP_004350888.1 tyrosine-type recombinase/integrase -
  RS_RS13145 (RS00927) purM 2826032..2827093 (-) 1062 WP_011002533.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18635.24 Da        Isoelectric Point: 6.6495

>NTDB_id=22500 RS_RS13130 WP_011002531.1 2822729..2823238(-) (radC) [Ralstonia pseudosolanacearum GMI1000]
MSQLSFSSFDSSLMVRDAQGRYLLATAEQILEAARQAIERKMQRGTSFTSPAAVKEYLRAKLAGFEHEVFAVLFMDTQHR
LIEYAEMFRGTIDGASVYPRELVKEALRLNAAAVIVSHNHPSGNPEPSGADRALTQRLKEALGLVDVRVLDHVIVAGTDT
TSFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=22500 RS_RS13130 WP_011002531.1 2822729..2823238(-) (radC) [Ralstonia pseudosolanacearum GMI1000]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATTCCTCGCTGATGGTGCGTGACGCACAGGGCCGCTACCTGCTGGCGACTGC
CGAGCAGATTCTGGAGGCCGCGCGCCAAGCCATCGAGCGCAAGATGCAGCGTGGTACGTCGTTCACGTCGCCGGCGGCGG
TCAAGGAGTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCATGAGGTGTTCGCGGTGCTGTTCATGGACACGCAGCATCGG
CTGATCGAGTACGCCGAAATGTTCCGAGGCACCATCGACGGCGCATCGGTGTATCCGCGCGAGCTGGTCAAAGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCATCGTGTCGCACAACCACCCGAGTGGCAATCCCGAGCCGAGCGGGGCCGACCGAGCAC
TGACCCAGCGGCTCAAGGAGGCGCTGGGGCTGGTGGACGTGCGCGTGCTGGATCACGTCATCGTCGCGGGCACCGACACC
ACATCGTTTGCCGAACGTGGCCTGATCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XW55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.775

84.024

0.385

Multiple sequence alignment