Detailed information
Bioinformatically predicted
Overview
| Name | exbB | Type | Machinery gene |
| Locus tag | RS_RS12675 | Genome accession | NC_003295 |
| Coordinates | 2737062..2737682 (+) | Length | 206 a.a. |
| NCBI ID | WP_011002444.1 | Uniprot ID | Q8XWE6 |
| Organism | Ralstonia pseudosolanacearum GMI1000 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2732062..2742682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RS_RS12665 (RS01055) | sodB | 2733298..2733876 (-) | 579 | WP_011002442.1 | superoxide dismutase [Fe] | - |
| RS_RS12670 (RS01054) | xseA | 2734022..2735437 (-) | 1416 | WP_019718337.1 | exodeoxyribonuclease VII large subunit | - |
| RS_RS12675 (RS01053) | exbB | 2737062..2737682 (+) | 621 | WP_011002444.1 | MotA/TolQ/ExbB proton channel family protein | Machinery gene |
| RS_RS12680 (RS01052) | - | 2737705..2738136 (+) | 432 | WP_011002445.1 | ExbD/TolR family protein | - |
| RS_RS12685 (RS01051) | lpxK | 2738152..2739201 (+) | 1050 | WP_011002446.1 | tetraacyldisaccharide 4'-kinase | - |
| RS_RS12690 (RS05763) | - | 2739261..2739449 (+) | 189 | WP_003266270.1 | Trm112 family protein | - |
| RS_RS12695 (RS05764) | kdsB | 2739468..2740274 (+) | 807 | WP_011002447.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| RS_RS12700 (RS05765) | adk | 2740594..2741262 (+) | 669 | WP_011002448.1 | adenylate kinase | - |
| RS_RS12705 (RS05766) | - | 2741423..2742181 (+) | 759 | WP_011002449.1 | 3-hydroxyacyl-CoA dehydrogenase | - |
Sequence
Protein
Download Length: 206 a.a. Molecular weight: 22288.15 Da Isoelectric Point: 9.3208
>NTDB_id=22499 RS_RS12675 WP_011002444.1 2737062..2737682(+) (exbB) [Ralstonia pseudosolanacearum GMI1000]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG
Nucleotide
Download Length: 621 bp
>NTDB_id=22499 RS_RS12675 WP_011002444.1 2737062..2737682(+) (exbB) [Ralstonia pseudosolanacearum GMI1000]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCAGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGCCAGAACGTCGCTCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCAGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGCCAGAACGTCGCTCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| exbB | Pseudomonas stutzeri DSM 10701 |
40.488 |
99.515 |
0.403 |