Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   B6V88_RS00680 Genome accession   NZ_CP020615
Coordinates   139674..140222 (+) Length   182 a.a.
NCBI ID   WP_253664881.1    Uniprot ID   -
Organism   Legionella micdadei strain NZ2016     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 134674..145222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V88_RS00660 (B6V88_00660) - 135044..135226 (-) 183 WP_045098083.1 hypothetical protein -
  B6V88_RS00665 (B6V88_00665) - 135383..138223 (+) 2841 WP_045098084.1 hypothetical protein -
  B6V88_RS00670 (B6V88_00670) dapB 138299..139036 (-) 738 WP_045098085.1 4-hydroxy-tetrahydrodipicolinate reductase -
  B6V88_RS15090 - 139205..139360 (-) 156 Protein_135 YqaE/Pmp3 family membrane protein -
  B6V88_RS00680 (B6V88_00680) rocC 139674..140222 (+) 549 WP_253664881.1 ProQ/FinO family protein Regulator
  B6V88_RS00685 (B6V88_00685) - 140399..140806 (-) 408 WP_045098088.1 acyl-CoA thioesterase -
  B6V88_RS00690 (B6V88_00690) priA 140803..142287 (-) 1485 WP_253664882.1 primosomal protein N' -
  B6V88_RS14775 - 142278..142991 (-) 714 WP_253664883.1 hypothetical protein -
  B6V88_RS00695 (B6V88_00695) - 142976..143470 (-) 495 WP_045100474.1 6-carboxytetrahydropterin synthase -
  B6V88_RS00700 (B6V88_00700) - 143470..144582 (-) 1113 WP_045100475.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20732.41 Da        Isoelectric Point: 11.1461

>NTDB_id=224977 B6V88_RS00680 WP_253664881.1 139674..140222(+) (rocC) [Legionella micdadei strain NZ2016]
MRRQELHPRTAVINKTQKNKSKKARNEALSWLAVTFPQVFDNSLRIRPLKTGIMHDILAYADKAQEAGISKSKLREAVVL
FTRRIDYLTCLKAREMRIDLDGNPVAMVTEEEAERAAVKIKKRVEKSARNARKNLLSKVPNQSSRLSQPGFQPSQEIIPL
FQSALLLTACKMLLCKRRVPLP

Nucleotide


Download         Length: 549 bp        

>NTDB_id=224977 B6V88_RS00680 WP_253664881.1 139674..140222(+) (rocC) [Legionella micdadei strain NZ2016]
ATGAGAAGACAAGAGCTTCATCCGCGGACAGCTGTAATTAATAAAACACAAAAAAATAAATCAAAGAAAGCTCGTAATGA
AGCTTTATCATGGCTAGCAGTTACTTTTCCGCAAGTATTTGATAATAGTTTACGAATTCGACCGCTCAAAACAGGAATTA
TGCATGATATCTTAGCTTACGCAGATAAAGCACAAGAAGCAGGGATATCGAAGAGCAAGCTTCGTGAGGCAGTAGTTCTA
TTTACCCGTCGCATTGATTATTTAACCTGCCTTAAAGCGCGTGAAATGCGAATTGATTTAGATGGTAATCCTGTTGCCAT
GGTGACTGAAGAAGAAGCGGAGAGGGCGGCGGTTAAAATTAAAAAACGAGTTGAGAAAAGTGCACGTAATGCACGCAAAA
ATCTGCTCAGTAAGGTGCCAAACCAATCCAGTAGGTTAAGCCAACCGGGTTTTCAACCAAGCCAAGAAATTATCCCCCTT
TTCCAGAGCGCGCTCCTGCTTACAGCATGCAAAATGCTTCTGTGCAAACGACGCGTTCCCCTTCCGTGA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(25-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

67.485

89.56

0.604

Multiple sequence alignment