Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C2U45_RS20510 Genome accession   NZ_CP026199
Coordinates   3980314..3980829 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ECONIH6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3975314..3985829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U45_RS20465 (C2U45_20465) csrA 3975901..3976086 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C2U45_RS20495 (C2U45_20495) yqaB 3977544..3978110 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C2U45_RS20500 (C2U45_20500) yqaA 3978107..3978535 (+) 429 WP_039023139.1 YqaA family protein -
  C2U45_RS20505 (C2U45_20505) gshA 3978608..3980164 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C2U45_RS20510 (C2U45_20510) luxS 3980314..3980829 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C2U45_RS20515 (C2U45_20515) emrB 3980893..3982431 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C2U45_RS20520 (C2U45_20520) emrA 3982448..3983620 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C2U45_RS20525 (C2U45_20525) emrR 3983747..3984277 (-) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C2U45_RS20530 (C2U45_20530) ygaH 3984368..3984703 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C2U45_RS20535 (C2U45_20535) ygaZ 3984693..3985430 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=224966 C2U45_RS20510 WP_001130211.1 3980314..3980829(+) (luxS) [Escherichia coli strain ECONIH6]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=224966 C2U45_RS20510 WP_001130211.1 3980314..3980829(+) (luxS) [Escherichia coli strain ECONIH6]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731