Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   GBS_RS11225 Genome accession   NC_004368
Coordinates   622330..622518 (+) Length   62 a.a.
NCBI ID   WP_000027835.1    Uniprot ID   A0AAV3JNT7
Organism   Streptococcus agalactiae NEM316     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 613544..622288 622330..622518 flank 42
IS/Tn 621263..621874 622330..622518 flank 456


Gene organization within MGE regions


Location: 613544..622518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS11220 - 614923..615084 (-) 162 WP_000508795.1 TM2 domain-containing protein -
  GBS_RS03415 (gbs0594) - 615826..617103 (+) 1278 WP_000594360.1 ABC transporter permease -
  GBS_RS03420 (gbs0595) - 617113..617769 (+) 657 WP_000353149.1 ABC transporter ATP-binding protein -
  GBS_RS03425 (gbs0596) - 617769..619145 (+) 1377 WP_000594351.1 ABC transporter permease -
  GBS_RS03430 (gbs0597) - 619242..619895 (+) 654 WP_000699093.1 response regulator transcription factor -
  GBS_RS03435 (gbs0598) - 619892..621211 (+) 1320 WP_000734169.1 HAMP domain-containing sensor histidine kinase -
  GBS_RS03440 - 621263..621910 (-) 648 Protein_597 IS3 family transposase -
  GBS_RS03445 - 622088..622288 (+) 201 WP_000076708.1 CsbD family protein -
  GBS_RS11225 prx 622330..622518 (+) 189 WP_000027835.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7180.25 Da        Isoelectric Point: 4.7815

>NTDB_id=22486 GBS_RS11225 WP_000027835.1 622330..622518(+) (prx) [Streptococcus agalactiae NEM316]
MSIRTDIDEFKEAIDKGYISGNTVAIVRKNGKIFDYVLLHEEVREEEVVTVERVLDVLRKLS

Nucleotide


Download         Length: 189 bp        

>NTDB_id=22486 GBS_RS11225 WP_000027835.1 622330..622518(+) (prx) [Streptococcus agalactiae NEM316]
TTGTCTATCAGAACAGATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGT
GCGTAAAAACGGAAAGATATTTGATTATGTGTTACTACACGAAGAAGTGAGAGAAGAAGAGGTTGTTACAGTTGAGAGAG
TGCTTGATGTACTGAGGAAGTTATCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

72.222

87.097

0.629
  prx Streptococcus pyogenes MGAS8232

69.091

88.71

0.613
  prx Streptococcus pyogenes MGAS315

66.667

87.097

0.581
  prx Streptococcus pyogenes MGAS315

85

64.516

0.548
  prx Streptococcus pyogenes MGAS315

61.818

88.71

0.548
  prx Streptococcus pyogenes MGAS315

74.359

62.903

0.468
  prx Streptococcus pyogenes MGAS315

78.378

59.677

0.468

Multiple sequence alignment