Detailed information NTG0022486

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RS_RS06695
• Genome accession: NC_003295
• Coordinates: 1420990..1423578 (+)
• Length: 862 a.a.
• NCBI ID: WP_011001284.1
• Uniprot ID: Q8XZR0
• Organism: Ralstonia pseudosolanacearum GMI1000
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1415990..1428578

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS_RS06670 (RS02852)	glp	1416037..1417296 (+)	1260	WP_011001279.1	molybdopterin molybdotransferase MoeA	-
RS_RS06675 (RS02853)	moaD	1417316..1417573 (+)	258	WP_019718088.1	molybdopterin converting factor subunit 1	-
RS_RS06680 (RS02854)	-	1417586..1418116 (+)	531	WP_011001281.1	molybdenum cofactor biosynthesis protein MoaE	-
RS_RS06685 (RS02855)	crcB	1418113..1418493 (+)	381	WP_011001282.1	fluoride efflux transporter CrcB	-
RS_RS06690 (RS02856)	-	1418651..1420828 (+)	2178	WP_011001283.1	3-hydroxybutyrate oligomer hydrolase family protein	-
RS_RS06695 (RS02857)	clpC	1420990..1423578 (+)	2589	WP_011001284.1	ATP-dependent chaperone ClpB	Regulator
RS_RS06700 (RS02858)	-	1423811..1424821 (+)	1011	WP_011001285.1	sulfate ABC transporter substrate-binding protein	-
RS_RS06705 (RS02859)	ssuE	1424853..1425497 (+)	645	WP_011001286.1	NADPH-dependent FMN reductase	-
RS_RS06710 (RS02860)	-	1425633..1426643 (+)	1011	WP_011001287.1	aliphatic sulfonate ABC transporter substrate-binding protein	-
RS_RS06715 (RS02861)	ssuD	1426670..1427833 (+)	1164	WP_011001288.1	FMNH2-dependent alkanesulfonate monooxygenase	-

Sequence

Protein

• Length: 862 a.a.
• Molecular weight: 95559.46 Da
• Isoelectric Point: 5.6667

>NTDB_id=22486 RS_RS06695 WP_011001284.1 1420990..1423578(+) (clpC) [Ralstonia pseudosolanacearum GMI1000]
MRLDKLTTRFQEALADAQSLALGNDNPYIEPLHLLLAMLRQPDGATKNLLARAGVNAKGLEIALDNAIKRLPQVQGGEQV
QVGRDLGSLLQATEKEGIKRGDQFIASELFLLAVADDKGEAGRVAREHGLARRALEAAIDAVRGGQTVGSAEAESQREAL
KKYTIDLTEQARIGKLDPVIGRDDEIRRAIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPESLKNKRVLVLD
MAGLLAGAKYRGEFEERLKAVLNDIAKEEGQTILFIDEIHTMVGAGKAEGAIDAGNMLKPALARGELHCIGATTLDEYRK
YIEKDAALERRFQKVLVDEPSVEATIAILRGLQEKYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAARI
KMEIDSKPEAMDKLDRRLIQLKIEREAVKKETDEASQKRLELIEQEIERLQKEYADLEEIWKAEKGAAQGAAAVKEEIDR
VKLEIARLQREGKLDKVAELQYGRLPELEGKLKAATAAEASGQRPPNKLLRTQVGAEEIAEVVSRATGIPVSKMMQGERD
KLLRMEDRLHERVVGQDEAVRLVSDAIRRSRAGIADENKPYGSFLFLGPTGVGKTELCKALAGFLFDSEEHLIRIDMSEF
MEKHSVSRLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMT
SNLGSQLIQQMASESPDVIKGAVWQEVKTHFRPEFLNRIDEVVVFHALDQGHIESIARIQLQRLAARLAHMDLTLEISDP
AVAKLASAGYDPVFGARPLKRAIQQQIENPVARMILEGRFTPKDVVPVDYHDGHFTFDRVVR

Nucleotide

• Length: 2589 bp

>NTDB_id=22486 RS_RS06695 WP_011001284.1 1420990..1423578(+) (clpC) [Ralstonia pseudosolanacearum GMI1000]
ATGCGTTTGGACAAACTGACCACCCGCTTCCAGGAAGCGTTGGCCGACGCGCAAAGCCTGGCGTTGGGCAACGACAATCC
GTATATCGAACCGCTCCATCTGCTGCTGGCGATGCTGCGCCAGCCCGACGGGGCCACCAAGAACCTGCTGGCGCGCGCGG
GCGTCAACGCCAAGGGGCTCGAGATCGCGCTCGACAACGCGATCAAGCGCCTGCCGCAAGTGCAGGGCGGCGAACAGGTG
CAGGTCGGCCGGGACCTGGGCAGCCTGCTGCAGGCCACGGAGAAAGAGGGCATCAAGCGCGGTGACCAGTTCATCGCGAG
CGAGCTGTTCCTGCTGGCCGTGGCCGACGACAAGGGCGAGGCCGGCCGCGTCGCGCGCGAGCACGGGCTGGCGCGCCGTG
CGCTGGAGGCGGCCATCGATGCCGTGCGCGGCGGCCAGACCGTCGGCAGCGCCGAGGCCGAGAGCCAGCGCGAGGCGCTC
AAGAAGTACACCATCGACCTGACCGAGCAGGCGCGCATCGGCAAGCTCGACCCGGTCATTGGCCGCGACGACGAGATCCG
CCGCGCGATCCAGATCCTGCAGCGCCGCACCAAGAACAACCCGGTGCTGATCGGCGAGCCGGGCGTGGGCAAGACCGCCA
TCGTCGAGGGCCTGGCGCAGCGCATCATCAACGGCGAGGTGCCCGAGAGCCTGAAGAACAAGCGCGTGCTGGTGCTCGAC
ATGGCGGGCCTGCTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGGCCGTGCTCAACGATATCGCCAA
GGAAGAGGGCCAGACCATCCTCTTCATCGACGAGATCCACACCATGGTGGGCGCGGGCAAGGCCGAGGGCGCGATCGATG
CCGGCAACATGCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCACTGCATCGGCGCGACCACGCTGGATGAGTACCGCAAG
TACATCGAAAAGGATGCCGCGCTGGAGCGCCGCTTCCAGAAGGTGTTGGTCGACGAGCCGAGCGTGGAGGCGACCATCGC
CATCCTGCGCGGCCTGCAGGAGAAATACGAGCTGCACCACGGCGTGGAGATCACCGACCCGGCGATCGTGGCGGCGGCCG
AGCTGAGCCATCGCTACATCACCGACCGCTTCCTGCCCGACAAGGCCATCGACCTGATCGACGAGGCGGCCGCGCGCATC
AAGATGGAAATCGACTCGAAACCCGAGGCGATGGACAAGCTCGACCGCCGGCTGATCCAGCTGAAGATCGAGCGCGAGGC
GGTGAAGAAGGAAACCGACGAGGCGTCGCAGAAGCGGCTGGAGCTGATCGAGCAGGAAATCGAGCGGCTGCAGAAGGAGT
ACGCCGACCTCGAAGAGATCTGGAAGGCCGAGAAGGGCGCGGCGCAGGGCGCGGCGGCGGTGAAGGAAGAGATCGACCGG
GTCAAGCTGGAGATCGCCCGGCTGCAGCGCGAGGGCAAGCTCGACAAGGTGGCCGAGCTGCAGTACGGCAGGCTGCCCGA
GCTGGAAGGCAAGCTGAAGGCCGCCACCGCGGCGGAAGCCAGCGGCCAGAGGCCGCCCAACAAGCTGCTGCGCACGCAGG
TGGGCGCCGAAGAGATTGCCGAGGTGGTCAGCCGCGCCACGGGCATCCCCGTGTCGAAGATGATGCAGGGCGAGCGCGAC
AAGCTGCTGCGCATGGAAGACCGCCTGCACGAGCGCGTGGTCGGCCAGGACGAGGCGGTGCGGCTGGTGTCGGACGCCAT
CCGGCGCTCGCGCGCGGGCATCGCGGACGAGAACAAGCCTTACGGCTCGTTCCTGTTCCTGGGCCCGACGGGCGTGGGCA
AGACCGAACTGTGCAAGGCGCTGGCCGGCTTCCTGTTCGACTCGGAGGAGCACCTGATCCGCATCGACATGAGTGAGTTC
ATGGAGAAGCATTCGGTGAGCCGCCTGATCGGCGCGCCGCCGGGCTACGTCGGCTACGAGGAGGGCGGCTACCTGACCGA
GGCCGTGCGCCGCAAGCCGTACAGCGTGGTGCTGCTGGACGAGGTCGAGAAGGCGCATCCGGATGTGTTCAACATCCTGC
TGCAGGTGCTGGACGACGGCCGCCTGACCGATGGCCAGGGCCGCACGGTGGACTTCAAGAACACGGTGATCGTGATGACG
TCCAACCTGGGCTCGCAGCTGATCCAGCAGATGGCGTCCGAGTCGCCCGATGTGATCAAAGGTGCGGTGTGGCAGGAGGT
GAAGACGCATTTCCGGCCCGAGTTCCTGAACCGCATCGACGAGGTGGTGGTGTTCCACGCGCTCGACCAGGGCCACATCG
AGTCGATCGCGCGCATCCAGCTGCAGCGGCTGGCGGCCCGCCTGGCGCACATGGACCTGACGCTGGAGATCAGCGACCCG
GCGGTCGCCAAGCTGGCCTCGGCGGGGTACGACCCGGTGTTCGGCGCGCGGCCGCTCAAGCGCGCGATCCAGCAGCAGAT
CGAGAACCCGGTCGCGCGGATGATCCTGGAAGGCCGGTTCACGCCGAAGGACGTGGTGCCGGTGGATTACCACGACGGCC
ACTTCACCTTCGATCGTGTCGTGCGCTGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (341-441)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-762)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-846)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-144)

• ATPase family associated with various cellular activities (AAA) (AAA) (202-334)

3D structure

• AlphaFold DB: Q8XZR0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.958	100	0.474
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.383	82.483	0.399
clpC	Lactococcus lactis subsp. cremoris KW2	45.157	81.439	0.368