Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C1703_RS38670 Genome accession   NZ_CP026121
Coordinates   8536692..8537354 (-) Length   220 a.a.
NCBI ID   WP_114257189.1    Uniprot ID   -
Organism   Streptomyces sp. Go-475     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8531692..8542354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1703_RS38650 (C1703_38195) - 8532883..8533188 (+) 306 WP_114257185.1 PadR family transcriptional regulator -
  C1703_RS38655 (C1703_38200) - 8533243..8534517 (-) 1275 WP_114257186.1 APC family permease -
  C1703_RS38660 (C1703_38205) - 8534666..8535046 (-) 381 WP_114257187.1 metalloregulator ArsR/SmtB family transcription factor -
  C1703_RS38665 (C1703_38210) - 8535214..8536617 (+) 1404 WP_114257188.1 FAD-dependent oxidoreductase -
  C1703_RS38670 (C1703_38215) vraR 8536692..8537354 (-) 663 WP_114257189.1 response regulator transcription factor Regulator
  C1703_RS38675 (C1703_38220) - 8537351..8538478 (-) 1128 WP_114257190.1 sensor histidine kinase -
  C1703_RS38680 (C1703_38225) - 8538698..8539165 (+) 468 WP_114257191.1 DUF6223 family protein -
  C1703_RS38685 (C1703_38230) - 8539329..8541392 (+) 2064 WP_114257192.1 discoidin domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23874.70 Da        Isoelectric Point: 5.9524

>NTDB_id=224824 C1703_RS38670 WP_114257189.1 8536692..8537354(-) (vraR) [Streptomyces sp. Go-475]
MIRVLLVDDQPLIRSGFRALLDLEDDIEVVAEAADGREGLELAVKHLPDVALIDVQMPVVDGIEATRRIAADPALARVHV
VILTNYGLDEYVFDALRAGAAGFLVKDILPEDFLHAVRVAARGEALLAPSITRKLIHRYVTQPLPATRGKGLEELTGRER
EAVALVARGLSNDEIAGRMVISPMTAKTHVNRAMAKLHARDRAQLVVFAYESGLVVPPGS

Nucleotide


Download         Length: 663 bp        

>NTDB_id=224824 C1703_RS38670 WP_114257189.1 8536692..8537354(-) (vraR) [Streptomyces sp. Go-475]
ATGATCCGGGTCCTGCTCGTCGACGACCAGCCGCTCATCCGCAGCGGGTTCCGCGCGCTCCTCGACCTGGAGGACGACAT
CGAGGTGGTGGCCGAGGCGGCCGACGGGCGGGAAGGCTTGGAGCTGGCCGTGAAGCACCTGCCCGATGTGGCTCTCATCG
ACGTCCAGATGCCGGTCGTCGACGGCATCGAGGCGACCCGGCGCATCGCCGCCGACCCGGCCCTGGCCCGGGTGCACGTC
GTCATCCTGACCAACTACGGCCTGGACGAGTACGTCTTCGACGCGCTGCGCGCCGGCGCCGCCGGGTTCCTCGTGAAGGA
CATCCTGCCGGAGGACTTCCTGCACGCCGTGCGCGTCGCGGCGCGCGGCGAGGCCCTGCTGGCGCCCTCCATCACGCGCA
AGCTCATCCACCGCTACGTCACCCAGCCGCTCCCCGCGACCAGGGGGAAGGGACTGGAGGAGCTGACCGGCCGTGAGCGG
GAGGCCGTCGCCCTGGTGGCGCGGGGCCTGTCCAACGACGAGATCGCGGGCCGGATGGTGATCAGCCCGATGACGGCGAA
GACCCACGTCAACCGGGCCATGGCCAAGCTCCACGCCCGTGACCGGGCCCAACTCGTGGTGTTCGCCTACGAGTCGGGCC
TGGTGGTCCCGCCCGGCTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.85

97.273

0.368

Multiple sequence alignment