Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C1703_RS29820 Genome accession   NZ_CP026121
Coordinates   6484739..6485422 (+) Length   227 a.a.
NCBI ID   WP_114255723.1    Uniprot ID   -
Organism   Streptomyces sp. Go-475     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6479739..6490422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1703_RS29800 (C1703_29425) - 6479816..6480046 (-) 231 WP_031116896.1 hypothetical protein -
  C1703_RS29805 (C1703_29430) - 6480489..6482612 (+) 2124 WP_114255720.1 DNA topoisomerase IV subunit B -
  C1703_RS29810 (C1703_29435) - 6483070..6483594 (+) 525 WP_114255721.1 DUF1453 domain-containing protein -
  C1703_RS29815 (C1703_29440) - 6483591..6484742 (+) 1152 WP_114255722.1 histidine kinase -
  C1703_RS29820 (C1703_29445) vraR 6484739..6485422 (+) 684 WP_114255723.1 response regulator transcription factor Regulator
  C1703_RS29825 (C1703_29450) - 6485492..6486052 (+) 561 WP_114255724.1 DUF485 domain-containing protein -
  C1703_RS29830 (C1703_29455) - 6486049..6487641 (+) 1593 WP_114255725.1 cation acetate symporter -
  C1703_RS29835 (C1703_29460) - 6487670..6488365 (-) 696 WP_114255726.1 response regulator -
  C1703_RS29840 (C1703_29465) - 6488527..6489342 (+) 816 WP_114255727.1 ABC transporter ATP-binding protein -
  C1703_RS29845 (C1703_29470) - 6489332..6490195 (+) 864 WP_114255728.1 ABC transporter permease -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24328.72 Da        Isoelectric Point: 5.1747

>NTDB_id=224809 C1703_RS29820 WP_114255723.1 6484739..6485422(+) (vraR) [Streptomyces sp. Go-475]
MTEEAERKTARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGEEAVRLVGEVAPDVVLMDLRMPRCDGVEATRRIRAE
HPGTQVVVLTTFADDDSLFPALAAGARGYLTKDAGGEDIVRAVHSVLSGDAGLSPGIQRRLLERLTEDDHRPAAPREAPD
GLTARETEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFTKTGLKDRAQAVRYAYVQGLVRPPAG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=224809 C1703_RS29820 WP_114255723.1 6484739..6485422(+) (vraR) [Streptomyces sp. Go-475]
ATGACCGAGGAGGCCGAGCGGAAAACCGCTCGGGTGGTGGTCGCGGACGACCAGACGGTGGTGCGGGAGGGCATCGTGAT
GCTGCTCGGCCTGCTGCCCGGGATCGAGGTCGTCGGGGCCGCAGGAGACGGGGAGGAGGCGGTGCGGCTGGTCGGCGAAG
TCGCCCCGGACGTGGTGCTGATGGACCTGCGCATGCCCCGCTGCGACGGCGTGGAAGCGACCCGCAGGATCCGCGCGGAG
CACCCCGGGACGCAGGTCGTGGTGCTCACGACGTTCGCCGACGACGACTCGCTGTTCCCGGCGCTGGCCGCGGGGGCACG
CGGCTATCTCACCAAGGACGCGGGCGGAGAGGACATCGTGCGGGCGGTGCACAGCGTGCTGTCCGGGGACGCGGGACTCT
CGCCGGGCATTCAGAGACGGCTCCTGGAGCGCCTGACGGAGGACGACCACAGACCGGCCGCGCCCCGGGAGGCGCCGGAC
GGGCTCACCGCGCGGGAGACGGAGGTGCTGGTCCTCATCGCCGAGGGGCTCAGCAACCAGGAGATCGCCCGGAGGCTGCA
TGTCTCCACCGCGACCGTGAAGACGCACATCAACAACATGTTCACCAAGACGGGGCTCAAGGACCGTGCGCAGGCGGTGC
GTTACGCGTATGTGCAGGGGCTGGTGCGGCCACCAGCGGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-216)

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

94.714

0.379

Multiple sequence alignment