Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   B7L44_RS19325 Genome accession   NZ_CP020588
Coordinates   3964765..3965091 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter nosocomialis strain SSA3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3959765..3970091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L44_RS19305 (B7L44_19305) - 3959864..3960493 (-) 630 WP_031982153.1 FHA domain-containing protein -
  B7L44_RS19310 (B7L44_19310) gspD 3960534..3962810 (-) 2277 WP_002053167.1 type II secretion system secretin GspD -
  B7L44_RS19315 (B7L44_19315) - 3962852..3963691 (-) 840 WP_004710893.1 type II secretion system protein N -
  B7L44_RS19320 (B7L44_19320) gspN 3963691..3964434 (-) 744 WP_004710896.1 type II secretion system protein N -
  B7L44_RS19325 (B7L44_19325) hns 3964765..3965091 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  B7L44_RS19330 (B7L44_19330) - 3965286..3965726 (-) 441 WP_185126662.1 acyl-CoA thioesterase -
  B7L44_RS19335 (B7L44_19335) - 3965734..3966927 (-) 1194 WP_004710901.1 hypothetical protein -
  B7L44_RS19340 (B7L44_19340) - 3966937..3967776 (-) 840 WP_083009350.1 hypothetical protein -
  B7L44_RS19345 (B7L44_19345) - 3967785..3968552 (-) 768 WP_083009351.1 uroporphyrinogen-III synthase -
  B7L44_RS19350 (B7L44_19350) hemC 3968557..3969474 (-) 918 WP_205200472.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=224573 B7L44_RS19325 WP_002053185.1 3964765..3965091(-) (hns) [Acinetobacter nosocomialis strain SSA3]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=224573 B7L44_RS19325 WP_002053185.1 3964765..3965091(-) (hns) [Acinetobacter nosocomialis strain SSA3]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAGCCACGCTACCGTAACAAAAACAACTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATCGAAAAGGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991

Multiple sequence alignment