Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C2E56_RS00265 Genome accession   NZ_CP026084
Coordinates   32308..33069 (+) Length   253 a.a.
NCBI ID   WP_001266269.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NJ1606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27308..38069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E56_RS00250 (C2E56_00255) - 28606..29943 (+) 1338 WP_000746089.1 CHAP domain-containing protein -
  C2E56_RS00255 (C2E56_00260) - 30067..31035 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  C2E56_RS00260 (C2E56_00265) - 31143..32318 (+) 1176 WP_000171460.1 pyridoxal phosphate-dependent aminotransferase -
  C2E56_RS00265 (C2E56_00270) recO 32308..33069 (+) 762 WP_001266269.1 DNA repair protein RecO Machinery gene
  C2E56_RS00270 (C2E56_00275) - 33132..34010 (+) 879 WP_000420130.1 CPBP family intramembrane glutamic endopeptidase -
  C2E56_RS00275 (C2E56_00280) plsX 34088..35080 (+) 993 WP_000717409.1 phosphate acyltransferase PlsX -
  C2E56_RS00280 (C2E56_00285) - 35091..35330 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  C2E56_RS00285 (C2E56_00290) purC 35454..36158 (+) 705 WP_001064658.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29668.10 Da        Isoelectric Point: 6.2989

>NTDB_id=224549 C2E56_RS00265 WP_001266269.1 32308..33069(+) (recO) [Streptococcus agalactiae strain NJ1606]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=224549 C2E56_RS00265 WP_001266269.1 32308..33069(+) (recO) [Streptococcus agalactiae strain NJ1606]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628