Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   B7L44_RS02750 Genome accession   NZ_CP020588
Coordinates   566794..567429 (-) Length   211 a.a.
NCBI ID   WP_004884597.1    Uniprot ID   K9BQS5
Organism   Acinetobacter nosocomialis strain SSA3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 561794..572429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L44_RS02715 (B7L44_02715) mlaE 562123..562899 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  B7L44_RS02720 (B7L44_02720) - 562899..563582 (+) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  B7L44_RS02725 (B7L44_02725) - 563609..564250 (+) 642 WP_213034135.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  B7L44_RS02730 (B7L44_02730) - 564262..564549 (+) 288 WP_000250997.1 STAS domain-containing protein -
  B7L44_RS02735 (B7L44_02735) - 564623..565636 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  B7L44_RS02740 (B7L44_02740) - 565794..566375 (+) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  B7L44_RS02745 (B7L44_02745) - 566390..566791 (+) 402 WP_004884602.1 NUDIX hydrolase -
  B7L44_RS02750 (B7L44_02750) comF 566794..567429 (-) 636 WP_004884597.1 ComF family protein Machinery gene
  B7L44_RS02755 (B7L44_02755) recG 567422..569467 (-) 2046 WP_016804172.1 ATP-dependent DNA helicase RecG -
  B7L44_RS02760 (B7L44_02760) - 569488..570303 (+) 816 WP_006580703.1 NAD(P)H-binding protein -
  B7L44_RS02765 (B7L44_02765) - 570383..571369 (+) 987 WP_025465644.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24642.88 Da        Isoelectric Point: 9.9089

>NTDB_id=224548 B7L44_RS02750 WP_004884597.1 566794..567429(-) (comF) [Acinetobacter nosocomialis strain SSA3]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKIQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=224548 B7L44_RS02750 WP_004884597.1 566794..567429(-) (comF) [Acinetobacter nosocomialis strain SSA3]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAGCAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTCTTACAGCAAATAAAATTTCCTAAGATACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9BQS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948

Multiple sequence alignment