Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GBS_RS02200 Genome accession   NC_004368
Coordinates   384010..384735 (+) Length   241 a.a.
NCBI ID   WP_000912307.1    Uniprot ID   A0AAV3JGZ9
Organism   Streptococcus agalactiae NEM316     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 379010..389735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS02165 (gbs0353) tsaE 379813..380256 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GBS_RS02170 (gbs0354) - 380249..380770 (+) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  GBS_RS02175 (gbs0355) brpA 380779..382086 (+) 1308 WP_000708156.1 biofilm formation/cell division transcriptional regulator BrpA -
  GBS_RS02180 - 382150..382446 (-) 297 WP_000690173.1 hypothetical protein -
  GBS_RS02185 (gbs0357) - 382443..382862 (-) 420 WP_000368097.1 HIT family protein -
  GBS_RS02190 - 383198..383701 (+) 504 WP_000773453.1 hypothetical protein -
  GBS_RS02195 - 383753..383938 (-) 186 WP_000368100.1 hypothetical protein -
  GBS_RS02200 (gbs0359) pptA 384010..384735 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  GBS_RS02205 (gbs0360) - 384737..385777 (+) 1041 WP_000732714.1 ABC transporter permease -
  GBS_RS02210 (gbs0361) - 385870..386058 (+) 189 WP_001161739.1 hypothetical protein -
  GBS_RS02215 (gbs0362) - 386095..386589 (+) 495 WP_000620669.1 hypothetical protein -
  GBS_RS02220 (gbs0363) - 386600..386929 (+) 330 WP_000806219.1 hypothetical protein -
  GBS_RS02225 (gbs0366) - 387145..387372 (+) 228 WP_000368981.1 hypothetical protein -
  GBS_RS02230 (gbs0367) - 387385..388878 (+) 1494 WP_001091156.1 primase C-terminal domain-containing protein -
  GBS_RS02235 (gbs0369) - 389134..389337 (+) 204 WP_000878297.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26835.26 Da        Isoelectric Point: 4.5704

>NTDB_id=22452 GBS_RS02200 WP_000912307.1 384010..384735(+) (pptA) [Streptococcus agalactiae NEM316]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMARAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=22452 GBS_RS02200 WP_000912307.1 384010..384735(+) (pptA) [Streptococcus agalactiae NEM316]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAGTTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGTATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAGACACCAAGTCTCTATGAGGAGCTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACCGA
TGAAGTTATGGCACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCAATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACACACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.824

99.17

0.772
  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768

Multiple sequence alignment