Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   B7L31_RS18975 Genome accession   NZ_CP020584
Coordinates   3800764..3801582 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain JBA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3795764..3806582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L31_RS18940 - 3796347..3796476 (-) 130 Protein_3563 hypothetical protein -
  B7L31_RS18945 (B7L31_18780) rpoZ 3796515..3796793 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B7L31_RS18950 (B7L31_18785) gmk 3796866..3797495 (-) 630 WP_000015937.1 guanylate kinase -
  B7L31_RS18955 (B7L31_18790) ispH 3797618..3798568 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B7L31_RS18960 (B7L31_18795) fimU 3798738..3799211 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B7L31_RS18965 (B7L31_18800) pilV 3799205..3799765 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  B7L31_RS18970 (B7L31_18805) pilW 3799766..3800767 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  B7L31_RS18975 (B7L31_18810) pilX 3800764..3801582 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B7L31_RS18980 (B7L31_18815) pilY1 3801594..3805448 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  B7L31_RS18985 (B7L31_18820) pilY2 3805461..3805943 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  B7L31_RS18990 (B7L31_18825) pilE 3805940..3806365 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=224480 B7L31_RS18975 WP_000149374.1 3800764..3801582(+) (pilX) [Acinetobacter baumannii strain JBA13]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=224480 B7L31_RS18975 WP_000149374.1 3800764..3801582(+) (pilX) [Acinetobacter baumannii strain JBA13]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment