Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C2E46_RS00270 Genome accession   NZ_CP026082
Coordinates   34081..34842 (+) Length   253 a.a.
NCBI ID   WP_001266268.1    Uniprot ID   Q3K407
Organism   Streptococcus agalactiae strain YZ1605     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 29081..39842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E46_RS00255 (C2E46_00255) pcsB 30415..31716 (+) 1302 WP_161501760.1 peptidoglycan hydrolase PcsB -
  C2E46_RS00260 (C2E46_00260) - 31840..32808 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  C2E46_RS00265 (C2E46_00265) - 32916..34091 (+) 1176 WP_000171460.1 pyridoxal phosphate-dependent aminotransferase -
  C2E46_RS00270 (C2E46_00270) recO 34081..34842 (+) 762 WP_001266268.1 DNA repair protein RecO Machinery gene
  C2E46_RS00275 (C2E46_00275) - 34906..35784 (+) 879 WP_000420125.1 CPBP family intramembrane glutamic endopeptidase -
  C2E46_RS00280 (C2E46_00280) plsX 35862..36854 (+) 993 WP_000717409.1 phosphate acyltransferase PlsX -
  C2E46_RS00285 (C2E46_00285) - 36865..37104 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  C2E46_RS00290 (C2E46_00290) purC 37228..37932 (+) 705 WP_001064658.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29642.07 Da        Isoelectric Point: 6.4090

>NTDB_id=224449 C2E46_RS00270 WP_001266268.1 34081..34842(+) (recO) [Streptococcus agalactiae strain YZ1605]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLHLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=224449 C2E46_RS00270 WP_001266268.1 34081..34842(+) (recO) [Streptococcus agalactiae strain YZ1605]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGCACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K407

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.228

97.233

0.625