Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   B6S64_RS13400 Genome accession   NZ_CP020574
Coordinates   2687964..2688782 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 15A5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2682964..2693782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6S64_RS19740 - 2683547..2683676 (-) 130 Protein_2512 hypothetical protein -
  B6S64_RS13370 (B6S64_13370) rpoZ 2683715..2683993 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B6S64_RS13375 (B6S64_13375) gmk 2684066..2684695 (-) 630 WP_000015937.1 guanylate kinase -
  B6S64_RS13380 (B6S64_13380) ispH 2684818..2685768 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B6S64_RS13385 (B6S64_13385) fimU 2685938..2686411 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B6S64_RS13390 (B6S64_13390) pilV 2686405..2686965 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  B6S64_RS13395 (B6S64_13395) pilW 2686966..2687967 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  B6S64_RS13400 (B6S64_13400) pilX 2687964..2688782 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B6S64_RS13405 (B6S64_13405) pilY1 2688794..2692648 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  B6S64_RS13410 (B6S64_13410) pilY2 2692661..2693143 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  B6S64_RS13415 (B6S64_13415) pilE 2693140..2693565 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=224289 B6S64_RS13400 WP_000149374.1 2687964..2688782(+) (pilX) [Acinetobacter baumannii strain 15A5]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=224289 B6S64_RS13400 WP_000149374.1 2687964..2688782(+) (pilX) [Acinetobacter baumannii strain 15A5]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment