Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CLFO_RS09995 Genome accession   NZ_CP020559
Coordinates   2152978..2153925 (-) Length   315 a.a.
NCBI ID   WP_070969939.1    Uniprot ID   A0AAC9WGA6
Organism   Clostridium formicaceticum strain DSM 92     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147978..2158925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLFO_RS09975 (CLFO_20270) - 2148206..2150110 (-) 1905 WP_070969931.1 sigma 54-interacting transcriptional regulator -
  CLFO_RS09980 (CLFO_20280) - 2150276..2151247 (-) 972 WP_242950343.1 siderophore ABC transporter substrate-binding protein -
  CLFO_RS09985 (CLFO_20290) - 2151279..2152034 (-) 756 WP_070969934.1 ABC transporter ATP-binding protein -
  CLFO_RS09990 (CLFO_20300) - 2152031..2152981 (-) 951 WP_070969937.1 iron chelate uptake ABC transporter family permease subunit -
  CLFO_RS09995 (CLFO_20310) ceuB 2152978..2153925 (-) 948 WP_070969939.1 ABC transporter permease Machinery gene
  CLFO_RS10000 (CLFO_20320) - 2154122..2154913 (+) 792 WP_070973311.1 helix-turn-helix transcriptional regulator -
  CLFO_RS10005 (CLFO_20330) - 2155047..2155253 (+) 207 WP_070969942.1 DUF1657 domain-containing protein -
  CLFO_RS10010 (CLFO_20340) - 2155292..2156605 (+) 1314 WP_070969945.1 voltage-gated chloride channel family protein -
  CLFO_RS10015 (CLFO_20350) - 2156687..2157397 (-) 711 WP_070969948.1 DUF421 domain-containing protein -
  CLFO_RS10020 (CLFO_20360) - 2157575..2158720 (-) 1146 WP_070969950.1 iron-containing alcohol dehydrogenase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34895.04 Da        Isoelectric Point: 10.2111

>NTDB_id=224101 CLFO_RS09995 WP_070969939.1 2152978..2153925(-) (ceuB) [Clostridium formicaceticum strain DSM 92]
MKKRYLVSVLIILSISSIFIGVKNIHFLDILYFNEEKIQILVLSRFPRLISIIVAGMSMGISGLIMQQITRNKFVSPTTA
ATVDSARLGILVSLLLYSSASSFQKMLISFGFALAGTFLFVKILKKVRFKNEIFIPLIGIMLGNIIDAITTFFAYRYDLV
QNISSWLQGDFSMVIKGRYELLYFSIPLTILAYLYANQFTVAGMGEAFSANLGLNYNKVVNLGLMIVALSTSLVVITVGR
IPFLGLIIPNIVTIYQGDHLKKNLVPTALLGAVFLLFCDILGRIIIYPYEVSIGLTVGILGSLIFLYLLIRGSKG

Nucleotide


Download         Length: 948 bp        

>NTDB_id=224101 CLFO_RS09995 WP_070969939.1 2152978..2153925(-) (ceuB) [Clostridium formicaceticum strain DSM 92]
ATGAAAAAAAGATATTTAGTTTCTGTGTTGATCATATTATCTATTTCTTCTATTTTTATAGGGGTAAAAAATATTCATTT
CTTAGATATCCTATATTTTAATGAAGAAAAAATCCAAATATTAGTACTGAGTCGATTTCCTCGGCTTATTAGTATTATCG
TAGCTGGGATGAGCATGGGTATAAGTGGTTTGATTATGCAACAAATTACCCGAAATAAATTTGTATCTCCAACAACTGCT
GCAACAGTGGATAGTGCTAGGTTAGGAATTTTGGTTTCTCTTTTACTCTATTCCTCTGCCAGCAGCTTTCAAAAAATGCT
AATTTCCTTTGGATTTGCCTTGGCGGGAACCTTTCTGTTTGTGAAAATCCTAAAAAAAGTAAGGTTTAAAAATGAGATTT
TTATACCGCTTATTGGTATTATGTTAGGTAATATTATAGATGCCATTACCACTTTTTTTGCTTATAGGTACGATCTTGTG
CAAAATATTTCCTCTTGGTTGCAGGGAGATTTTTCTATGGTAATCAAAGGAAGGTATGAACTTTTATATTTCAGTATCCC
CCTTACCATTCTTGCTTATTTATATGCGAATCAATTTACAGTAGCGGGGATGGGAGAGGCGTTTTCTGCAAATTTAGGGT
TAAACTACAACAAGGTTGTGAACTTAGGTTTGATGATTGTAGCCTTATCAACTTCCCTTGTGGTAATTACTGTTGGACGA
ATCCCCTTTTTAGGGTTGATCATTCCAAACATCGTAACAATCTATCAAGGAGATCATTTAAAAAAGAATCTTGTTCCTAC
TGCTTTGCTTGGTGCAGTATTTCTACTTTTCTGTGATATTCTTGGACGTATCATTATTTATCCCTACGAGGTTTCTATCG
GACTTACAGTAGGTATATTAGGAAGTCTAATATTTCTCTATCTACTGATAAGGGGGAGTAAAGGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.896

97.778

0.527

Multiple sequence alignment