Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B6V57_RS04865 Genome accession   NZ_CP020545
Coordinates   983137..983766 (+) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli strain ZJ3920     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 978137..988766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V57_RS04840 (B6V57_04800) ycbZ 978537..980297 (-) 1761 WP_000156501.1 Lon protease family protein -
  B6V57_RS04845 (B6V57_04805) matP 980483..980935 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  B6V57_RS04850 (B6V57_04810) ompA 981013..982053 (-) 1041 WP_001350588.1 porin OmpA -
  B6V57_RS04860 (B6V57_04820) sulA 982409..982918 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  B6V57_RS04865 (B6V57_04825) sxy/tfoX 983137..983766 (+) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B6V57_RS04870 (B6V57_04830) yccS 983729..985891 (-) 2163 WP_000875041.1 YccS family putative transporter -
  B6V57_RS04875 (B6V57_04835) yccF 985901..986347 (-) 447 WP_001261236.1 YccF domain-containing protein -
  B6V57_RS04880 (B6V57_04840) helD 986470..988524 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=224028 B6V57_RS04865 WP_000839137.1 983137..983766(+) (sxy/tfoX) [Escherichia coli strain ZJ3920]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=224028 B6V57_RS04865 WP_000839137.1 983137..983766(+) (sxy/tfoX) [Escherichia coli strain ZJ3920]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986

Multiple sequence alignment