Detailed information NTG0223970

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B5S57_RS17960
• Genome accession: NZ_CP020534
• Coordinates: 2677306..2678307 (-)
• Length: 333 a.a.
• NCBI ID: WP_017046716.1
• Uniprot ID: Q4G3U1
• Organism: Vibrio anguillarum strain 425
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2672306..2683307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B5S57_RS17950 (B5S57_17805)	cysM	2673468..2674358 (+)	891	WP_026027976.1	cysteine synthase CysM	-
B5S57_RS17955 (B5S57_17810)	mutS	2674601..2677189 (+)	2589	WP_029189955.1	DNA mismatch repair protein MutS	-
B5S57_RS17960 (B5S57_17815)	rpoS	2677306..2678307 (-)	1002	WP_017046716.1	RNA polymerase sigma factor RpoS	Regulator
B5S57_RS17965 (B5S57_17820)	nlpD	2678380..2679312 (-)	933	WP_041769244.1	murein hydrolase activator NlpD	-
B5S57_RS17970 (B5S57_17825)	-	2679318..2679944 (-)	627	WP_013857716.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
B5S57_RS17975 (B5S57_17830)	surE	2679944..2680690 (-)	747	WP_010320454.1	5'/3'-nucleotidase SurE	-
B5S57_RS17980 (B5S57_17835)	truD	2680703..2681800 (-)	1098	WP_013857717.1	tRNA pseudouridine(13) synthase TruD	-
B5S57_RS17985 (B5S57_17840)	ispF	2681955..2682440 (-)	486	WP_013857718.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B5S57_RS17990 (B5S57_17845)	ispD	2682433..2683164 (-)	732	WP_010320457.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 38302.21 Da
• Isoelectric Point: 4.4454

>NTDB_id=223970 B5S57_RS17960 WP_017046716.1 2677306..2678307(-) (rpoS) [Vibrio anguillarum strain 425]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
TNNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide

• Length: 1002 bp

>NTDB_id=223970 B5S57_RS17960 WP_017046716.1 2677306..2678307(-) (rpoS) [Vibrio anguillarum strain 425]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGGTTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTAC
GTCTGAACGAGCGTATCAGTTCCGTTGATACACCGATTGGCGGCGATGGTGACAAAGCACTACTCGATATCATCCCAGAT
ACGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTGAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGACTATTAGGTTATGAACCGTCCACCTTAGAAGAAGTCGGGCGCG
AAATTAACTTAACCCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGTCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-247)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-89)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

3D structure

• AlphaFold DB: Q4G3U1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	86.826	100	0.871