Detailed information NTG0223952

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: B5S57_RS12165
• Genome accession: NZ_CP020534
• Coordinates: 1358132..1359556 (-)
• Length: 474 a.a.
• NCBI ID: WP_013856630.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain 425
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1353132..1364556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B5S57_RS12150 (B5S57_12030)	cdd	1355899..1356786 (-)	888	WP_013856628.1	cytidine deaminase	-
B5S57_RS12155 (B5S57_12035)	-	1356995..1357675 (-)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
B5S57_RS12160 (B5S57_12040)	-	1357675..1358007 (-)	333	WP_033197434.1	CidA/LrgA family protein	-
B5S57_RS12165 (B5S57_12045)	sbcB	1358132..1359556 (-)	1425	WP_013856630.1	exodeoxyribonuclease I	Machinery gene
B5S57_RS12170 (B5S57_12050)	-	1359708..1361075 (-)	1368	WP_026028454.1	L-cystine transporter	-
B5S57_RS12175 (B5S57_12055)	-	1361296..1361979 (-)	684	WP_013856632.1	NAD(P)H-binding protein	-
B5S57_RS12180 (B5S57_12060)	-	1362196..1364154 (+)	1959	WP_013856634.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54593.05 Da
• Isoelectric Point: 5.4372

>NTDB_id=223952 B5S57_RS12165 WP_013856630.1 1358132..1359556(-) (sbcB) [Vibrio anguillarum strain 425]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCAILAPAKTLTAENAD
HIGVDRNLCLEHLALLKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=223952 B5S57_RS12165 WP_013856630.1 1358132..1359556(-) (sbcB) [Vibrio anguillarum strain 425]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGTGAACCACTGGTTATCTATTGCCAACCACCAGCGG
ACTATCTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTAGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGCCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTATACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCACTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCGCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCCTCAAGCAGTACCCAGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCGG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGATCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTAACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTGGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.973	99.789	0.808