Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   NMA_RS00955 Genome accession   NC_003116
Coordinates   167551..168810 (-) Length   419 a.a.
NCBI ID   WP_002233385.1    Uniprot ID   P57038
Organism   Neisseria meningitidis Z2491     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 162551..173810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS14170 - 162854..163003 (-) 150 WP_033908521.1 hypothetical protein -
  NMA_RS00935 (NMA0181) - 163021..163218 (-) 198 WP_002215316.1 hypothetical protein -
  NMA_RS00940 (NMA0182) - 163229..164245 (-) 1017 WP_002231465.1 lysozyme inhibitor LprI family protein -
  NMA_RS00945 (NMA0183) gltS 164344..165558 (-) 1215 WP_002216198.1 sodium/glutamate symporter -
  NMA_RS00950 (NMA0184) - 165776..167182 (-) 1407 WP_002245780.1 SEL1-like repeat protein -
  NMA_RS00955 (NMA0185) kpsS 167551..168810 (-) 1260 WP_002233385.1 capsule biosynthesis protein Regulator
  NMA_RS00960 (NMA0186) - 168947..171061 (-) 2115 WP_002246741.1 capsular polysaccharide biosynthesis protein -
  NMA_RS00965 (NMA0187) rfbC 171085..171624 (-) 540 WP_042507222.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  NMA_RS00970 (NMA0188) rfbA 171678..172544 (-) 867 WP_010981057.1 glucose-1-phosphate thymidylyltransferase RfbA -
  NMA_RS00975 (NMA0189) rfbB 172650..173675 (-) 1026 WP_002236574.1 dTDP-glucose 4,6-dehydratase -

Sequence


Protein


Download         Length: 419 a.a.        Molecular weight: 48694.51 Da        Isoelectric Point: 8.6667

>NTDB_id=22391 NMA_RS00955 WP_002233385.1 167551..168810(-) (kpsS) [Neisseria meningitidis Z2491]
MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLADWLTANGKTVHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQ
EYITQHHIQAVVCFGDTRPYHVIAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
KAPTPVHGGFTPMAKNAIRYYIELFRNLRKYPDYIHHRAPNAGHYLKPWSLSILKRLNYYIEDIQIAKRVEAGKYGKFFI
VPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAPADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVP
LPVFLRHGLGMVTINSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLNVTQINGNF
YSQVFFPNKNTSDSSTPTT

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=22391 NMA_RS00955 WP_002233385.1 167551..168810(-) (kpsS) [Neisseria meningitidis Z2491]
ATGAAACAGACCGTCCTCAAAAATAACCTGCAAAACCTGCTTGAAAGCGCAGAAAATATCCTGCTGCTTCAAGGCCCTGT
CGGCGATTTTTTTCTGCGCCTTGCCGACTGGCTGACTGCAAACGGCAAAACCGTACATAAATTCAACTTTAATGCAGGCG
ACGACTATTTTTATCCGCCCACTCAAGCGCATACCGTTGTTTTTAACGACAACTACGATGCCTTTCCTGAGTTTTTGCAA
GAATACATCACTCAACATCACATCCAGGCCGTTGTCTGCTTTGGCGACACACGCCCTTATCACGTCATTGCAAAACGCAT
TGCAAACGAAAACCAAGCCAGTTTCTGGGCGTTTGAAGAAGGCTATTTCCGCCCCTACTACATCACCTTAGAAAAAGACG
GCGTCAACGCATTTTCCCCGTTGCCGCGCCGTGCCGACTTTTTTCTTGAACAATTCCCTAAGCTTGCCCAGCAAGAATAT
AAAGCGCCAACGCCGGTACACGGCGGTTTTACGCCCATGGCAAAAAACGCTATCCGTTACTATATCGAGTTGTTCCGCAA
TCTACGCAAATACCCCGACTACATCCACCACCGCGCACCCAATGCCGGCCATTACCTCAAACCGTGGTCGCTCTCCATCC
TCAAGCGTTTGAACTACTATATTGAAGACATCCAAATCGCCAAACGTGTGGAAGCAGGCAAATACGGCAAGTTTTTTATT
GTTCCCTTGCAGGTATTCAACGACAGCCAAGTCCGTATCCATTGCGACTTTCCCAGCGTCCGCAGCTTCCTGCTCCATGT
TTTGAGTTCATTTGCCGAACACGCGCCTGCCGATACCAACATCATCATCAAGCATCATCCTATGGACCGCGGCTTTATCG
ACTACTGGCGCGACATTAAACGCTTTATCAAAGAACACCCCGAACTCAAAGGCCGTGTGATTTATGTCCATGATGTCCCC
CTGCCCGTTTTCCTGCGCCACGGTCTCGGCATGGTTACCATCAACAGCACCAGCGGCCTGTCCGGACTGATTCACAATAT
GCCAGTTAAGGTTCTCGGCCGTGCCTATTATGATATTCCCGGCATTACTGACCAAAATACCTTGGCAGAATTTTGGAATC
ATCCGACACCGCCTGACAAAGAGCTGTTCCATGCCTACCGAATGTACCACCTCAACGTGACCCAAATTAACGGCAACTTC
TACAGTCAGGTCTTTTTTCCTAACAAAAACACATCCGACTCTTCCACACCAACAACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P57038

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.579

94.033

0.363


Multiple sequence alignment