Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AWB10_RS16460 Genome accession   NZ_CP020509
Coordinates   3127888..3128517 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 165     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3122888..3133517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB10_RS16445 (AWB10_16415) helD 3123130..3125184 (-) 2055 WP_000420533.1 DNA helicase IV -
  AWB10_RS16450 (AWB10_16420) yccF 3125307..3125753 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AWB10_RS16455 (AWB10_16425) yccS 3125763..3127925 (+) 2163 WP_000875020.1 YccS family putative transporter -
  AWB10_RS16460 (AWB10_16430) sxy/tfoX 3127888..3128517 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AWB10_RS16465 (AWB10_16435) sulA 3128736..3129245 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AWB10_RS16475 (AWB10_16445) ompA 3129602..3130642 (+) 1041 WP_000750416.1 porin OmpA -
  AWB10_RS16480 (AWB10_16450) matP 3130718..3131170 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AWB10_RS16485 (AWB10_16455) ycbZ 3131356..3133116 (+) 1761 WP_072644848.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=223858 AWB10_RS16460 WP_000839153.1 3127888..3128517(-) (sxy/tfoX) [Escherichia coli strain 165]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=223858 AWB10_RS16460 WP_000839153.1 3127888..3128517(-) (sxy/tfoX) [Escherichia coli strain 165]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment