Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RK88_RS09730 Genome accession   NZ_CP026071
Coordinates   1859166..1860011 (-) Length   281 a.a.
NCBI ID   WP_001573568.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_30     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854166..1865011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK88_RS09685 (RK88_009685) - 1854203..1854922 (+) 720 WP_000400841.1 type II toxin-antitoxin system PemK/MazF family toxin -
  RK88_RS09690 (RK88_009690) rpsR 1855154..1855396 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  RK88_RS09695 (RK88_009695) ssb 1855448..1855951 (-) 504 WP_000934799.1 single-stranded DNA-binding protein -
  RK88_RS09700 (RK88_009700) rpsF 1855972..1856268 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  RK88_RS09710 (RK88_009710) - 1856512..1856703 (+) 192 WP_001052483.1 hypothetical protein -
  RK88_RS09715 (RK88_009715) ychF 1856789..1857886 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  RK88_RS09720 (RK88_009720) - 1857898..1858101 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  RK88_RS09725 (RK88_009725) - 1858131..1859012 (-) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  RK88_RS09730 (RK88_009730) spo0J 1859166..1860011 (-) 846 WP_001573568.1 ParB/RepB/Spo0J family partition protein Regulator
  RK88_RS09740 (RK88_009740) - 1860675..1861778 (+) 1104 WP_000655687.1 PLP-dependent transferase -
  RK88_RS09745 (RK88_009745) metC 1861775..1862935 (+) 1161 WP_000175858.1 cystathionine beta-lyase MetC -
  RK88_RS09750 (RK88_009750) - 1862904..1864745 (+) 1842 WP_000077311.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32796.88 Da        Isoelectric Point: 10.1158

>NTDB_id=223823 RK88_RS09730 WP_001573568.1 1859166..1860011(-) (spo0J) [Staphylococcus aureus strain FDAARGOS_30]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIKQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=223823 RK88_RS09730 WP_001573568.1 1859166..1860011(-) (spo0J) [Staphylococcus aureus strain FDAARGOS_30]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CGCAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCGCAAGATGA
CTTTGTGAGAATCATTAAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381