Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NMB_RS10365 Genome accession   NC_003112
Coordinates   2096642..2097610 (+) Length   322 a.a.
NCBI ID   WP_010981018.1    Uniprot ID   Q9JXL1
Organism   Neisseria meningitidis MC58     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2091642..2102610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS10345 (NMB1988) fetA 2092652..2094796 (+) 2145 WP_010981016.1 TonB-dependent siderophore receptor FetA/FrpB -
  NMB_RS10355 (NMB1989) - 2095513..2096478 (+) 966 WP_010981017.1 siderophore ABC transporter substrate-binding protein -
  NMB_RS10360 - 2096496..2096645 (+) 150 WP_162013446.1 hypothetical protein -
  NMB_RS10365 (NMB1990) ceuB 2096642..2097610 (+) 969 WP_010981018.1 ABC transporter permease Machinery gene
  NMB_RS10370 (NMB1991) - 2097600..2098574 (+) 975 WP_002221668.1 iron chelate uptake ABC transporter family permease subunit -
  NMB_RS10375 (NMB1992) - 2098618..2099244 (+) 627 WP_002258733.1 FmdE family protein -
  NMB_RS10380 (NMB1993) - 2099327..2100085 (+) 759 WP_002226767.1 ABC transporter ATP-binding protein -
  NMB_RS10385 (NMB1994) - 2100389..2101477 (+) 1089 WP_002225868.1 autotransporter adhesin NadA -
  NMB_RS10390 (NMB1995) - 2101543..2101881 (-) 339 WP_002225869.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34511.83 Da        Isoelectric Point: 9.9393

>NTDB_id=22382 NMB_RS10365 WP_010981018.1 2096642..2097610(+) (ceuB) [Neisseria meningitidis MC58]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMVGASQSAALGLLLMTLLLPAAPLPAKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVIEAVATFIAY
ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLMGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAY
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=22382 NMB_RS10365 WP_010981018.1 2096642..2097610(+) (ceuB) [Neisseria meningitidis MC58]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTGCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTGGG
CGTTGCCGATTTCCGCTGGTCTGATGTGTTTTCACTGTCCGACAGCCAGCAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCCGGCATGATTATGCAGATTTTGATGCGCAACCGTTTTGTC
GAACCGTCGATGGTGGGCGCAAGCCAAAGCGCGGCTTTAGGTTTGCTGCTGATGACCCTGCTGCTGCCGGCCGCGCCGCT
GCCGGCGAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACCGCGCAACTGATGGTGCCTTTGGTCGGGATTATTTTCGGCGGTGTGATTGAGGCGGTAGCCACCTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTAA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATGGGCGACAGGTTGCGCCA
AAGCCTGCCTGCGGTGGCCTTGCTGGGCGCATCTTTGGTGTTGCTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTATTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTGAGGAAACCCGCCTAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JXL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391

Multiple sequence alignment