Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   RK88_RS04560 Genome accession   NZ_CP026071
Coordinates   855511..856134 (+) Length   207 a.a.
NCBI ID   WP_001208760.1    Uniprot ID   Q93SM0
Organism   Staphylococcus aureus strain FDAARGOS_30     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 850511..861134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK88_RS04530 (RK88_004530) - 851485..851952 (-) 468 WP_000966146.1 CcdC family protein -
  RK88_RS04535 (RK88_004535) - 852046..852144 (-) 99 WP_016187065.1 hypothetical protein -
  RK88_RS04540 (RK88_004540) - 852131..852373 (-) 243 WP_000246909.1 YneF family protein -
  RK88_RS04545 (RK88_004545) recP/tkt 852651..854639 (-) 1989 WP_000481438.1 transketolase Machinery gene
  RK88_RS04550 (RK88_004550) - 854760..854999 (-) 240 WP_000071351.1 DUF896 domain-containing protein -
  RK88_RS04555 (RK88_004555) sosA 855135..855368 (-) 234 WP_000499651.1 DNA damage-induced cell division inhibitor SosA -
  RK88_RS04560 (RK88_004560) dinR/lexA 855511..856134 (+) 624 WP_001208760.1 transcriptional repressor LexA Regulator
  RK88_RS04565 (RK88_004565) - 856514..857530 (-) 1017 WP_001798092.1 CAP domain-containing protein -
  RK88_RS04575 (RK88_004575) guaC 857552..858529 (-) 978 WP_000688127.1 GMP reductase -
  RK88_RS04580 (RK88_004580) rpsN 858686..858955 (-) 270 WP_001085657.1 30S ribosomal protein S14 -
  RK88_RS04585 (RK88_004585) rpmG 859409..859558 (-) 150 WP_001265708.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23301.46 Da        Isoelectric Point: 4.8811

>NTDB_id=223786 RK88_RS04560 WP_001208760.1 855511..856134(+) (dinR/lexA) [Staphylococcus aureus strain FDAARGOS_30]
MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEIVSDQTNDNINME
ETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
EEDEATVKRFYKEKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM

Nucleotide


Download         Length: 624 bp        

>NTDB_id=223786 RK88_RS04560 WP_001208760.1 855511..856134(+) (dinR/lexA) [Staphylococcus aureus strain FDAARGOS_30]
ATGAGAGAATTAACAAAACGACAAAGCGAAATATATAACTATATTAAACAAGTTGTTCAAACGAAAGGTTATCCGCCTAG
TGTTCGCGAAATTGGTGAAGCAGTTGGCTTAGCATCCAGTTCAACTGTTCATGGTCACCTTTCACGTCTTGAAGAAAAAG
GCTATATAAGAAGAGATCCAACGAAACCACGTGCTATAGAAATTGTAAGTGATCAAACAAATGATAATATTAATATGGAA
GAAACGATTCATGTGCCAGTTATTGGTAAAGTCACAGCAGGTGTTCCTATTACCGCAGTAGAAAATATTGAAGAATATTT
TCCATTACCTGAACACTTAACATCGACACACAATAGCGACATATTCATATTAAACGTCGTAGGCGACAGTATGATTGAGG
CTGGTATATTAGACGGAGACAAAGTAATTGTTCGCAGTCAAACCATAGCAGAAAATGGAGACATTATTGTTGCTATGACT
GAGGAAGATGAAGCAACTGTCAAACGCTTCTATAAAGAAAAAAATCGTTATCGATTACAACCTGAAAATAGTACAATGGA
GCCAATTTACCTCGACAATGTTGCTGTAATCGGGAAAGTAATTGGTTTGTACCGCGAAATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(86-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q93SM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

66.341

99.034

0.657