Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RK88_RS00035 Genome accession   NZ_CP026071
Coordinates   4131..4601 (-) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain FDAARGOS_30     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..9601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK88_RS00010 (RK88_000010) deoD 347..1057 (-) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  RK88_RS00015 (RK88_000015) deoC 1372..2034 (+) 663 WP_001083335.1 deoxyribose-phosphate aldolase -
  RK88_RS00025 (RK88_000025) - 2314..3615 (+) 1302 WP_001242308.1 pyrimidine-nucleoside phosphorylase -
  RK88_RS00030 (RK88_000030) - 3629..3979 (+) 351 WP_001024028.1 membrane protein -
  RK88_RS00035 (RK88_000035) luxS 4131..4601 (-) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  RK88_RS00040 (RK88_000040) - 4911..6095 (+) 1185 WP_001291490.1 M20 family metallopeptidase -
  RK88_RS00045 (RK88_000045) - 6095..7288 (+) 1194 WP_000183722.1 hypothetical protein -
  RK88_RS00050 (RK88_000050) - 7687..8358 (+) 672 WP_000120549.1 DUF2750 domain-containing protein -
  RK88_RS00055 (RK88_000055) coaW 8484..9287 (-) 804 WP_000862728.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=223745 RK88_RS00035 WP_000164421.1 4131..4601(-) (luxS) [Staphylococcus aureus strain FDAARGOS_30]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=223745 RK88_RS00035 WP_000164421.1 4131..4601(-) (luxS) [Staphylococcus aureus strain FDAARGOS_30]
ATGACAAAAATGAATGTTGAAAGTTTTAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCTG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAGGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404

Multiple sequence alignment