Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   RK85_RS13000 Genome accession   NZ_CP026070
Coordinates   2491786..2492409 (+) Length   207 a.a.
NCBI ID   WP_001208760.1    Uniprot ID   Q93SM0
Organism   Staphylococcus aureus strain FDAARGOS_27     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2486786..2497409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK85_RS12970 (RK85_012970) - 2487760..2488227 (-) 468 WP_000966142.1 CcdC family protein -
  RK85_RS12975 (RK85_012975) - 2488321..2488419 (-) 99 WP_001789897.1 hypothetical protein -
  RK85_RS12980 (RK85_012980) - 2488406..2488648 (-) 243 WP_000246909.1 YneF family protein -
  RK85_RS12985 (RK85_012985) recP/tkt 2488926..2490914 (-) 1989 WP_000481443.1 transketolase Machinery gene
  RK85_RS12990 (RK85_012990) - 2491035..2491274 (-) 240 WP_000071351.1 DUF896 domain-containing protein -
  RK85_RS12995 (RK85_012995) sosA 2491410..2491643 (-) 234 WP_000499647.1 DNA damage-induced cell division inhibitor SosA -
  RK85_RS13000 (RK85_013000) dinR/lexA 2491786..2492409 (+) 624 WP_001208760.1 transcriptional repressor LexA Regulator
  RK85_RS13005 (RK85_013005) - 2492789..2493805 (-) 1017 WP_001789887.1 CAP domain-containing protein -
  RK85_RS13015 (RK85_013015) guaC 2493827..2494804 (-) 978 WP_000688126.1 GMP reductase -
  RK85_RS13020 (RK85_013020) rpsN 2494961..2495230 (-) 270 WP_001085655.1 30S ribosomal protein S14 -
  RK85_RS13025 (RK85_013025) rpmG 2495684..2495833 (-) 150 WP_001265708.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23301.46 Da        Isoelectric Point: 4.8811

>NTDB_id=223732 RK85_RS13000 WP_001208760.1 2491786..2492409(+) (dinR/lexA) [Staphylococcus aureus strain FDAARGOS_27]
MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEIVSDQTNDNINME
ETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
EEDEATVKRFYKEKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM

Nucleotide


Download         Length: 624 bp        

>NTDB_id=223732 RK85_RS13000 WP_001208760.1 2491786..2492409(+) (dinR/lexA) [Staphylococcus aureus strain FDAARGOS_27]
ATGAGAGAATTAACAAAACGACAAAGCGAAATATATAACTATATTAAACAAGTTGTTCAAACGAAAGGTTATCCGCCTAG
TGTTCGCGAAATTGGTGAAGCAGTTGGCTTAGCATCCAGTTCAACTGTTCATGGTCACCTTTCACGTCTTGAAGAAAAAG
GCTATATAAGAAGAGATCCAACGAAACCACGTGCTATAGAAATTGTAAGTGATCAAACAAATGATAATATTAATATGGAA
GAAACGATTCATGTGCCAGTTATTGGTAAAGTCACAGCAGGTGTTCCTATTACCGCAGTAGAAAATATTGAAGAATATTT
TCCATTACCTGAACACTTAACATCGACACACAATAGCGACATATTCATATTAAACGTCGTAGGCGACAGTATGATTGAGG
CTGGTATATTAGACGGAGACAAAGTAATTGTTCGCAGTCAAACCATAGCAGAAAATGGAGACATTATTGTTGCTATGACT
GAGGAAGATGAAGCAACTGTCAAACGCTTCTATAAAGAAAAAAATCGTTATCGATTACAACCTGAAAATAGTACAATGGA
GCCAATTTACCTAGACAATGTTGCTGTAATTGGGAAAGTAATTGGTTTGTACCGCGAAATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(86-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q93SM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

66.341

99.034

0.657