Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CHELV3228_RS06190 Genome accession   NZ_CP020478
Coordinates   1155298..1155810 (-) Length   170 a.a.
NCBI ID   WP_082200156.1    Uniprot ID   A0AAX2UK57
Organism   Campylobacter helveticus strain ATCC 51209     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150298..1160810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHELV3228_RS06165 (CHELV3228_1213) - 1152002..1152598 (+) 597 WP_082200151.1 MBL fold metallo-hydrolase -
  CHELV3228_RS06170 (CHELV3228_1214) - 1152598..1152897 (+) 300 WP_082200152.1 hypothetical protein -
  CHELV3228_RS10695 - 1152884..1153507 (-) 624 WP_082200153.1 DUF2920 family protein -
  CHELV3228_RS10700 - 1153510..1154076 (-) 567 WP_082200154.1 DUF2920 family protein -
  CHELV3228_RS06185 (CHELV3228_1216) - 1154066..1155301 (-) 1236 WP_082200155.1 DUF2920 family protein -
  CHELV3228_RS06190 (CHELV3228_1217) ctsG 1155298..1155810 (-) 513 WP_082200156.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CHELV3228_RS06195 (CHELV3228_1218) tsaD 1155820..1156827 (-) 1008 WP_082200157.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CHELV3228_RS06200 (CHELV3228_1219) - 1156824..1158212 (-) 1389 WP_082200158.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CHELV3228_RS06205 (CHELV3228_1220) dxr 1158209..1159273 (-) 1065 WP_082200159.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CHELV3228_RS06210 (CHELV3228_1221) - 1159270..1159998 (-) 729 WP_082200160.1 phosphatidate cytidylyltransferase -
  CHELV3228_RS06215 (CHELV3228_1222) - 1160008..1160385 (-) 378 WP_082200161.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18298.17 Da        Isoelectric Point: 7.7812

>NTDB_id=223620 CHELV3228_RS06190 WP_082200156.1 1155298..1155810(-) (ctsG) [Campylobacter helveticus strain ATCC 51209]
MKKAFTILELVFVIIILGILAAIALPKLSSSKDEAEISKALNNLRTFINDVSVYALKNDKLANTKLISNVSGVEEVDLSQ
NLSDVAFKVGDDERCVEFVFMQGVSFVLMGISSNDNVKNAIKAVANGANESVLTNADFTSKSKNKACVALSQSESFKALA
NKTYLLLGTK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=223620 CHELV3228_RS06190 WP_082200156.1 1155298..1155810(-) (ctsG) [Campylobacter helveticus strain ATCC 51209]
ATGAAAAAGGCTTTTACGATTTTAGAACTTGTTTTTGTAATTATCATACTTGGAATTTTGGCAGCCATTGCTTTGCCAAA
ACTTAGCTCAAGTAAAGATGAGGCTGAGATTAGCAAGGCTTTGAATAATCTTAGAACTTTCATTAACGATGTGAGCGTTT
ATGCGCTTAAAAACGATAAATTAGCAAATACGAAGCTTATTAGCAATGTTAGCGGCGTGGAGGAAGTGGATTTGTCGCAG
AATTTAAGCGATGTGGCTTTTAAGGTGGGCGATGATGAAAGATGTGTGGAATTTGTTTTTATGCAAGGGGTGAGTTTTGT
TTTAATGGGAATTTCTAGTAATGATAATGTCAAAAATGCCATTAAAGCGGTGGCAAATGGAGCAAATGAGAGTGTTTTAA
CAAATGCTGATTTTACCAGTAAATCCAAAAATAAGGCTTGTGTGGCATTGAGTCAAAGCGAAAGCTTTAAAGCCTTAGCG
AATAAGACCTATTTATTATTAGGCACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

63.529

100

0.635

Multiple sequence alignment