Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BVH57_RS14035 Genome accession   NZ_CP020464
Coordinates   2789792..2791591 (+) Length   599 a.a.
NCBI ID   WP_005714370.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain Pen     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2784792..2796591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH57_RS14020 (BVH57_14020) - 2785739..2786428 (+) 690 WP_005710655.1 hydrolase -
  BVH57_RS14025 (BVH57_14025) brnQ 2787081..2788460 (+) 1380 WP_005685364.1 branched-chain amino acid transport system II carrier protein -
  BVH57_RS14030 (BVH57_14030) - 2788569..2789663 (-) 1095 WP_005685362.1 LCP family protein -
  BVH57_RS14035 (BVH57_14035) pepF 2789792..2791591 (+) 1800 WP_005714370.1 oligoendopeptidase F Regulator
  BVH57_RS14040 (BVH57_14040) - 2791588..2792469 (+) 882 WP_005710663.1 NAD(P)-dependent oxidoreductase -
  BVH57_RS14045 (BVH57_14045) - 2792466..2793314 (+) 849 WP_005714368.1 metallophosphoesterase family protein -
  BVH57_RS14050 (BVH57_14050) - 2793430..2794227 (-) 798 WP_005685358.1 metal ABC transporter permease -
  BVH57_RS14055 (BVH57_14055) - 2794224..2794943 (-) 720 WP_005685357.1 metal ABC transporter ATP-binding protein -
  BVH57_RS14060 (BVH57_14060) - 2795110..2795454 (-) 345 WP_005694534.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67245.19 Da        Isoelectric Point: 5.5357

>NTDB_id=223442 BVH57_RS14035 WP_005714370.1 2789792..2791591(+) (pepF) [Lacticaseibacillus rhamnosus strain Pen]
MQHLPAREDVPTQLTWDLTTIYPDDSAWETDFKAVRAQAKAAVALKGTLGNSADALVTGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPSDKLTAWRDTESLKPFGHFIDAITVNREHVLTTAAEALIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKEAFEALLRAYESLKNTFAQTLSGQVKA
HNFNATAHHYKNARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLAVDQLHMYDIYTPLTGQPPLTYKLEQA
KAEALKALAPLGDDYLEHVREIFDNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELHTLVHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHSDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTD
TSMSQYYADLNARYYGPEVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPDAAARYLDYLKSGSSKY
AIDTMKTAGVDMTKPDYLEAAFSVFEQRLTELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=223442 BVH57_RS14035 WP_005714370.1 2789792..2791591(+) (pepF) [Lacticaseibacillus rhamnosus strain Pen]
ATGCAACATTTACCAGCACGAGAGGATGTCCCAACGCAATTGACCTGGGACCTGACAACGATTTATCCAGATGATTCAGC
TTGGGAAACCGACTTTAAAGCTGTCCGTGCCCAAGCCAAAGCGGCCGTCGCATTGAAAGGAACGTTAGGCAACTCGGCAG
ACGCCCTTGTTACCGGCATTAAAGCCGTACTTGCAGTTTTTCGACGCTTCGAGAAGGTTTACGTCTATTCAAGTTTAAAA
AGCGATCAAGATACCGGTAACGCCACTTATCAGGCGATGAATGCCAAAGCTGAAAGCCTGGGTGCTGAATTAGCCAGTCA
GTTAGCTTTTTTGGATCCGGAAATTCTGGCGATCCCAAGCGACAAATTAACGGCCTGGCGTGACACTGAAAGCTTGAAAC
CATTCGGACATTTTATTGATGCCATCACGGTAAATCGAGAACACGTCTTGACAACCGCTGCCGAGGCCTTGATTGCAAGT
GCGGGTGATGCCTTAAATGCCAGTCATGCGACCTTCAATGTATTAAACAACTCTGATCTGCAATTCGGGTTTGTTGAAAA
TGAAGATGGCGAAACCGTCCAGCTTAGTAACGGTTTGTACGGTCAATTGATTCGCTCAACTAATCGTAAATTACGCAAGG
AGGCTTTCGAGGCCCTTCTGCGTGCTTACGAAAGTTTGAAAAATACGTTTGCGCAAACGTTAAGTGGTCAAGTGAAAGCC
CATAATTTCAACGCGACGGCGCATCATTACAAAAATGCGCGTGCTGCCGCTATGGCAAGTAATCACATTCCGGAAAGTGT
GTACACGACGCTTATCGACCAGGTTAACACCCACCTGCCACTTTTACATCGTTATGTCGCCTTGCGTAAAAAGGTGTTGG
CAGTCGATCAGTTACACATGTATGACATTTACACACCACTGACTGGCCAGCCGCCGTTGACTTATAAGCTTGAACAAGCC
AAAGCAGAGGCCTTAAAAGCTTTAGCCCCACTAGGCGATGATTATCTTGAGCATGTTCGCGAAATTTTTGACAATCGCTA
TATTGATGTTGTCGAGAATAAAGGCAAACGTTCAGGCGCCTATTCCGGTGGTGCTTATGACACCAATCCGTTCATCTTAT
TGAACTGGCACGATGCCGTTGATGAACTCCATACGTTGGTTCACGAAACCGGCCACAGCGTCCACAGTTGGTACACGCGT
CACAATCAGCCGTATGTCTATGGTGATTATCCGATCTTTGTTGCCGAAATTGCTTCAACGACCAACGAAAACCTGTTAAC
TGATTATTTCCTGACACATTCGGATGATCCCAAAGTACGAGCCTACATTTTGAATTACTATCTCGATGGTTTTAAGGGAA
CTGTTTTCCGTCAGACACAATTTGCCGAGTTCGAGCACTGGATTCACCAACAGGATCAGCAAGGCGAACCGTTAACGGAC
ACCAGCATGTCACAATATTACGCCGATCTCAATGCCCGGTATTATGGACCGGAAGTTGCACGCGATCCGGAAATTGCTTT
TGAATGGGCCCGCATTCCGCACTTCTACTACAATTACTATGTTTACCAGTATGCAACCGGCTTTGCTGCTGCCTCAACCT
TAGCAGCGGGCATCAGTAGCGGTGAACCTGACGCGGCTGCCCGGTACTTAGACTATTTGAAGTCAGGGAGTTCTAAGTAT
GCCATTGACACCATGAAAACAGCTGGCGTTGATATGACCAAACCCGATTATCTTGAAGCCGCCTTTTCAGTATTTGAACA
GCGCTTGACGGAATTGGAAAAAATCTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.941

99.332

0.526

Multiple sequence alignment