Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | B4U56_RS03980 | Genome accession | NZ_CP020463 |
| Coordinates | 809391..809786 (+) | Length | 131 a.a. |
| NCBI ID | WP_002457121.1 | Uniprot ID | A0A7H5C5S7 |
| Organism | Staphylococcus epidermidis strain 1457 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 804391..814786
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4U56_RS03955 (B4U56_03950) | - | 805810..806214 (+) | 405 | WP_001829924.1 | F0F1 ATP synthase subunit epsilon | - |
| B4U56_RS03960 (B4U56_03955) | - | 806363..806596 (+) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| B4U56_RS03965 (B4U56_03960) | murA | 806706..807971 (+) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| B4U56_RS03970 (B4U56_03965) | fabZ | 808005..808442 (+) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| B4U56_RS03975 (B4U56_03970) | - | 808760..809200 (-) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| B4U56_RS03980 (B4U56_03975) | ssb | 809391..809786 (+) | 396 | WP_002457121.1 | single-stranded DNA-binding protein | Machinery gene |
| B4U56_RS03985 (B4U56_03980) | - | 810174..810833 (+) | 660 | WP_032606416.1 | transglycosylase family protein | - |
| B4U56_RS03990 (B4U56_03985) | tenA | 811118..811807 (+) | 690 | WP_001829894.1 | thiaminase II | - |
| B4U56_RS03995 (B4U56_03990) | thiD | 811800..812621 (+) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| B4U56_RS04000 (B4U56_03995) | thiM | 812614..813402 (+) | 789 | WP_001829971.1 | hydroxyethylthiazole kinase | - |
| B4U56_RS04005 (B4U56_04000) | thiE | 813408..814046 (+) | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15159.02 Da Isoelectric Point: 5.2661
>NTDB_id=223385 B4U56_RS03980 WP_002457121.1 809391..809786(+) (ssb) [Staphylococcus epidermidis strain 1457]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=223385 B4U56_RS03980 WP_002457121.1 809391..809786(+) (ssb) [Staphylococcus epidermidis strain 1457]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |