Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   B4V05_RS05365 Genome accession   NZ_CP020459
Coordinates   1062373..1063080 (-) Length   235 a.a.
NCBI ID   WP_231952379.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1057373..1068080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS05340 (B4V05_05330) rpsO 1057667..1057936 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  B4V05_RS05345 (B4V05_05335) rpsT 1058215..1058469 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  B4V05_RS05350 (B4V05_05340) holA 1058538..1059566 (-) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  B4V05_RS05355 (B4V05_05345) comEC 1059563..1061830 (-) 2268 WP_076632419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B4V05_RS05360 (B4V05_05350) - 1061827..1062315 (-) 489 WP_011374770.1 ComE operon protein 2 -
  B4V05_RS05365 (B4V05_05355) comEA 1062373..1063080 (-) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  B4V05_RS05370 (B4V05_05360) - 1063152..1064198 (-) 1047 WP_089535078.1 SepM family pheromone-processing serine protease -
  B4V05_RS05375 (B4V05_05365) coaD 1064200..1064697 (-) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  B4V05_RS05380 (B4V05_05370) rsmD 1064710..1065264 (-) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  B4V05_RS05385 (B4V05_05375) - 1065269..1065559 (-) 291 WP_076632420.1 YlbG family protein -
  B4V05_RS05390 (B4V05_05380) - 1065583..1066671 (-) 1089 WP_076632421.1 CAP-associated domain-containing protein -
  B4V05_RS05395 (B4V05_05385) - 1066682..1067869 (-) 1188 WP_011374777.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26146.73 Da        Isoelectric Point: 9.7682

>NTDB_id=223359 B4V05_RS05365 WP_231952379.1 1062373..1063080(-) (comEA) [Latilactobacillus sakei strain FAM18311]
MMWQDYWQRYRRFWWVPCLVLLGIIAGGFYWHQSQQKQKVTQNEQLLATSASKTKPATKKTHQAATKKKGGFVDIKGAVV
YPGIYPITVSETRLFEVLKNAGGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERTQEQASTG
TSANASSTSDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=223359 B4V05_RS05365 WP_231952379.1 1062373..1063080(-) (comEA) [Latilactobacillus sakei strain FAM18311]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATCATCGCGGG
TGGCTTTTATTGGCATCAATCGCAACAAAAACAAAAAGTAACGCAAAATGAGCAACTGCTAGCAACCAGTGCGTCTAAAA
CAAAACCCGCTACTAAGAAGACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATAAAAGGCGCGGTGGTC
TACCCGGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGATGC
GGCTGATACCAAGCGGCTTAATTTAGCTCAAAAGTTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATCGCAACGACCAGTGAGCGTACGCAAGAACAGGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCACGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

100

100

1
  comEA Lactococcus lactis subsp. cremoris KW2

36.797

98.298

0.362

Multiple sequence alignment