Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   B1745_RS06500 Genome accession   NZ_CP020457
Coordinates   1264421..1266217 (+) Length   598 a.a.
NCBI ID   WP_080881775.1    Uniprot ID   -
Organism   Lactobacillus amylolyticus strain L6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1259421..1271217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1745_RS06475 (B1745_06475) - 1259454..1259822 (-) 369 WP_080881771.1 hypothetical protein -
  B1745_RS08490 - 1259935..1260105 (-) 171 WP_006352816.1 hypothetical protein -
  B1745_RS06480 (B1745_06480) - 1260268..1260957 (-) 690 WP_080881772.1 DUF554 domain-containing protein -
  B1745_RS06485 (B1745_06485) - 1261051..1262214 (-) 1164 Protein_1243 LCP family protein -
  B1745_RS06490 (B1745_06490) - 1262468..1263100 (+) 633 WP_080881774.1 IS607 family transposase -
  B1745_RS06495 (B1745_06495) - 1263063..1264223 (+) 1161 WP_056956245.1 RNA-guided endonuclease InsQ/TnpB family protein -
  B1745_RS06500 (B1745_06500) pepF 1264421..1266217 (+) 1797 WP_080881775.1 oligoendopeptidase F Regulator
  B1745_RS06505 (B1745_06505) - 1266381..1266947 (+) 567 WP_155860208.1 hypothetical protein -
  B1745_RS06510 (B1745_06510) - 1266987..1267784 (-) 798 WP_080881777.1 metal ABC transporter permease -
  B1745_RS06515 (B1745_06515) - 1267784..1268431 (-) 648 WP_080881778.1 metal ABC transporter ATP-binding protein -
  B1745_RS06520 (B1745_06520) - 1268675..1270657 (-) 1983 WP_080881779.1 PTS fructose transporter subunit IIABC -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68162.59 Da        Isoelectric Point: 4.5863

>NTDB_id=223338 B1745_RS06500 WP_080881775.1 1264421..1266217(+) (pepF) [Lactobacillus amylolyticus strain L6]
MAIPTRSEIPEELTWDLTRVFKSDADWEKEYQAVKDETAKLSQYKGTFTSGKNLYQALTQIFAVKRRLENVYVYATMSSD
VDTANSHYLSYSAQAQSLASQFEAVTSFINPEILSIPEADLAKYKQEEPRLHDYDHWLDQVTSKRPHTLPAEQERLVADA
GDALSTSENTFNVLTNSDMEYGYVQDENGEMVQLSDGLYSILIQSQDRNVRKNAFDVLYASYGQFENSLASTLSGVVKAH
NYNARVHKYHSAREAALAENNVPTSVYDTLIKEVDSHLDLLHRYVALRKKILGLDDLQMWDMYVPLTGKPALSYNFEQAK
EEAKKALAPLGSDYLSHVDYIFNNRVIDVVENKNKVTGAYSGGAYDTDPYELLNWEDNVDSLYTLVHETGHSVHSWYTRH
NQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAEFEQFIHEADAKGEPLTAD
TLDDVYAQLNQRYYGDSVEPGGDIAKEWSRIPHFYYNFYVYQYATGFAAATALANKVVQGTQQDRDAYIGYLKSGSSAYP
IDIMKGAGVDMTKPDYLEDAFKTFARRLDEFESLIGQF

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=223338 B1745_RS06500 WP_080881775.1 1264421..1266217(+) (pepF) [Lactobacillus amylolyticus strain L6]
ATGGCAATTCCAACAAGAAGCGAAATCCCTGAAGAATTAACCTGGGATTTGACCCGTGTATTCAAAAGCGACGCGGATTG
GGAAAAAGAATATCAAGCTGTTAAAGATGAAACAGCGAAGTTAAGCCAGTATAAAGGTACTTTTACCTCTGGCAAAAATT
TGTATCAGGCCTTAACCCAAATTTTTGCAGTTAAGCGCCGGCTGGAAAACGTTTATGTCTACGCTACGATGTCCAGCGAT
GTCGATACTGCCAACAGCCACTACTTAAGCTATTCTGCTCAGGCTCAAAGTTTAGCCAGTCAGTTCGAAGCCGTTACTTC
ATTTATCAATCCTGAAATTTTGAGCATCCCCGAAGCTGATTTAGCCAAATACAAGCAAGAAGAGCCTCGGCTGCATGATT
ACGATCATTGGCTTGATCAAGTAACCAGCAAAAGACCGCATACTTTGCCAGCTGAACAAGAACGATTGGTGGCAGATGCT
GGCGATGCCCTGAGTACTTCCGAAAATACTTTTAACGTTTTAACCAATTCAGACATGGAATATGGCTACGTCCAGGATGA
AAATGGCGAAATGGTGCAATTATCCGACGGCTTGTACTCAATTTTGATTCAATCACAAGACCGCAATGTCCGTAAAAATG
CCTTTGACGTTTTATACGCCAGCTATGGTCAATTTGAAAACTCCCTGGCTTCCACCCTGTCAGGCGTGGTCAAGGCGCAC
AACTACAACGCACGCGTCCACAAGTATCACTCTGCTCGTGAAGCTGCATTAGCTGAAAACAACGTGCCAACCTCTGTTTA
TGATACTTTGATCAAAGAAGTCGACAGCCATCTTGACCTTTTGCACCGCTATGTTGCTTTGCGTAAAAAGATTCTGGGTC
TTGATGACCTGCAAATGTGGGACATGTATGTGCCTCTTACAGGTAAGCCTGCGCTTAGCTATAATTTTGAACAAGCAAAA
GAAGAAGCCAAGAAGGCTTTGGCACCATTGGGTAGCGATTACTTAAGCCACGTTGATTATATTTTTAACAACCGTGTCAT
TGACGTTGTAGAAAATAAAAACAAAGTTACTGGGGCTTACTCAGGTGGAGCTTACGATACTGATCCATATGAATTATTGA
ACTGGGAAGACAACGTTGATTCGCTCTATACTTTGGTTCATGAAACAGGCCACTCGGTTCACTCATGGTATACCCGCCAC
AATCAGCCTTACGTTTATGGCGATTACCCAATTTTTGTCGCTGAAATTGCTTCAACCACTAATGAAAATATTTTAACAGA
ATATTTCTTGGACCACATCACTGATCCTAAGACCCGTGCTTTCATCCTCAACTACTACCTTGACTCCTTCAAGGGAACAT
TATTCAGACAGACTCAATTCGCAGAATTTGAACAATTTATTCATGAAGCTGACGCTAAGGGCGAACCACTTACTGCTGAT
ACTTTAGACGATGTTTATGCTCAGTTAAACCAGCGCTACTACGGCGACAGCGTTGAACCTGGCGGCGATATTGCCAAAGA
ATGGTCACGCATTCCGCATTTCTATTACAACTTCTATGTTTACCAATATGCAACCGGCTTTGCAGCAGCAACTGCTCTTG
CCAATAAAGTAGTGCAGGGAACCCAGCAGGACCGCGATGCCTACATCGGTTATCTCAAGTCTGGTTCCAGCGCATATCCA
ATCGATATTATGAAGGGTGCCGGCGTTGATATGACTAAGCCAGACTATTTGGAAGATGCCTTTAAGACCTTTGCTCGTCG
CCTTGATGAATTCGAAAGTTTAATTGGGCAATTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.365

98.997

0.518

Multiple sequence alignment