Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   A6J88_RS21045 Genome accession   NZ_CP020452
Coordinates   1374765..1377971 (-) Length   1068 a.a.
NCBI ID   WP_080613857.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1369765..1382971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS21030 (A6J88_06910) - 1370120..1370887 (+) 768 WP_080613855.1 M48 family metallopeptidase -
  A6J88_RS21035 (A6J88_06915) - 1370985..1371224 (+) 240 WP_045072326.1 DUF333 domain-containing protein -
  A6J88_RS21040 (A6J88_06920) - 1371398..1374160 (-) 2763 WP_080613856.1 TonB-dependent receptor domain-containing protein -
  A6J88_RS21045 (A6J88_06925) recC 1374765..1377971 (-) 3207 WP_080613857.1 exodeoxyribonuclease V subunit gamma Machinery gene
  A6J88_RS21050 (A6J88_06930) - 1378523..1380364 (-) 1842 WP_080614493.1 PglL family O-oligosaccharyltransferase -
  A6J88_RS21055 (A6J88_06935) - 1380364..1380723 (-) 360 WP_019269793.1 DUF2069 domain-containing protein -
  A6J88_RS21060 (A6J88_06940) nfsB 1380860..1381510 (-) 651 WP_080613858.1 oxygen-insensitive NAD(P)H nitroreductase -
  A6J88_RS21070 (A6J88_06950) - 1381871..1382365 (-) 495 WP_080613859.1 NemA protein -
  A6J88_RS21075 (A6J88_06955) - 1382466..1382939 (-) 474 WP_070442847.1 hemerythrin domain-containing protein -

Sequence

Protein


Download         Length: 1068 a.a.        Molecular weight: 121393.64 Da        Isoelectric Point: 4.7821

>NTDB_id=223307 A6J88_RS21045 WP_080613857.1 1374765..1377971(-) (recC) [Neisseria mucosa strain FDAARGOS_260]
MFYLYQSNRLESLAALFAGIQRVRPLESALAAEQIVVQSQGMRRYLSVYLARELGVAANLQFSLPAGLTWQLMQKLIPDI
PALSPFSPEVMRWRLLDLFRSERFQTASEFEKVRSVLQSYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQEGKLLG
LGDDEVWQAQLWRYLDDGNQSAPHRVALWEKLLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNPSGQ
YWGNVIEAAQLLKGGDDADLSQTGHPLLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHCLQNDIQNLRMPSEHSR
VDLLDDGSVRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVLTPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKL
SRRQPLLYALEQTLDLLESRFEVDKVLPLLESGLVLRRFGLTADDLPLLHDTIAELNVHWGLDGTMRGAADNLFTWQQAL
ERIVLGWMLPDDGSPLWQNVSAWHGDVNRLDVFSRFAAFIRTLSRLAAEWRKPAAAEEWTERCRDLVQLLFLPDADDQYA
LQQFEQALAKWQEETALAGFRGTLPQHTVIRHIRRFLGSESQAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT
KAAVFDLIAKHPQKGDRARRDDDRYLFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTVAAMTGRRSKELAEH
WVEQHPLQPFSHRYFIADKISDDLFSTRQDYAEALNRPREQVRPFFSEALEENTPVPTVWQDDFIRFWKNPVKAWLQQTL
GWREPYRDEAWESAEPFEPQRADKIAAAYLDARRHNQDFQETAVRLDAESLLPAGELGKLWQQNFQAAAKRIDGALLQSP
KLPPFAYEIPFDGQTLQGSLGNLYQCGQVIYLDCKPNAPQRIALLLEHLIFCAVGSSETETRQTYIVQPEETTLYPEIPG
SHAQQMLQKWLTFFNLGQTRPLPFFAKTSLAAAEAYGKKQSWDDALNKARESYHGNKVSKGQKDYTEVALVFGNEDTEPV
EGALFQSLVEELLIPLLDAVKEESSDTA

Nucleotide


Download         Length: 3207 bp        

>NTDB_id=223307 A6J88_RS21045 WP_080613857.1 1374765..1377971(-) (recC) [Neisseria mucosa strain FDAARGOS_260]
ATGTTCTACCTCTACCAGTCCAACCGCCTCGAATCGCTAGCCGCCCTGTTTGCCGGAATCCAAAGGGTCAGGCCGCTTGA
GTCTGCTTTGGCGGCGGAACAGATTGTGGTGCAGAGTCAGGGGATGCGGCGTTATTTGAGTGTTTATCTGGCGCGCGAAC
TGGGGGTGGCGGCGAATTTGCAATTCAGCCTGCCGGCGGGTTTGACGTGGCAGTTGATGCAGAAGCTGATTCCCGATATT
CCCGCGCTCAGTCCGTTTTCGCCGGAGGTGATGCGCTGGCGGCTTTTGGATTTGTTCCGCAGCGAGCGTTTTCAGACGGC
CTCTGAATTTGAAAAAGTCCGTTCTGTCTTGCAAAGCTATTTGGGCAGCGGCGAGTCGGCGGATTATCAGTTGGCGGGGC
AGTTGGCGGATATTTTCGACCAGTATCTGGTGTACCGACCGCAGTGGATTGATGCCTGGCAGGAAGGCAAACTTTTGGGG
CTGGGCGACGACGAGGTCTGGCAGGCGCAGCTTTGGCGGTATTTGGATGACGGCAACCAATCCGCGCCGCACCGTGTGGC
GCTGTGGGAAAAGCTGCTGTCGTCTTTGGATAAGGCGCACCTGCCCGAACGGTTTTTCGTGTTCGGTATTTCGACGATGG
CGCCGATGTATTTGCAGCTTTTGCAGAAAATTTCGGAACATTGCGATGTGTTTGTGTTCGCGCTCAATCCGAGCGGCCAG
TATTGGGGCAATGTGATTGAGGCTGCGCAGCTTTTGAAGGGTGGCGACGATGCGGATTTGTCGCAGACGGGGCATCCGCT
GTTGGCGTCGTTGGGCAAGCAGGGGCGTGATTTTTTTGATTTTCTGACGGAAATCGGCTTGGAGGAGCAGCCTGTGTTTG
AAGAAGTTTCAGATGACACGCTGCTGCACTGCCTGCAAAACGATATTCAAAACCTGCGGATGCCGTCTGAACACAGCCGC
GTGGATTTGCTGGACGACGGCTCCGTCCGTATCGTGTCGGCACACAGCCCCTTGCGCGAATTGCAGATTTTGAAAGACAA
GCTGTTGCGGATTCTGCACGAACATCCCGACTGGCAGCCCCACGATATTGCCGTTTTGACGCCGAACATCGAGCCGTACA
GCCCGTTTATCGAGGCGGTGTTCGGGCAGGCGCAGGGTGGGGCGCAGGCTTTGCCGTATTCGGTGTCGGACGTGAAACTC
AGCCGCCGCCAGCCGCTGCTTTACGCGCTGGAGCAGACGCTGGATTTGCTGGAAAGCCGGTTTGAAGTCGATAAAGTGCT
GCCGCTGTTGGAAAGCGGTTTGGTGCTGCGCCGTTTCGGGCTGACGGCGGACGATTTGCCGCTGCTGCACGACACCATTG
CCGAATTGAATGTGCATTGGGGTTTGGACGGAACGATGCGCGGCGCGGCGGACAATCTGTTCACCTGGCAGCAGGCGTTG
GAACGCATCGTGTTGGGCTGGATGCTGCCCGACGACGGCAGTCCGCTCTGGCAAAACGTCAGCGCGTGGCACGGCGATGT
CAACCGCCTCGATGTGTTCAGCCGCTTTGCCGCCTTCATCCGCACACTGTCGCGCCTCGCCGCCGAGTGGCGCAAACCCG
CAGCGGCGGAAGAATGGACGGAACGCTGCCGCGATTTGGTGCAGTTATTATTCCTGCCCGATGCCGACGACCAATACGCC
TTGCAGCAGTTTGAGCAGGCGTTGGCAAAATGGCAGGAAGAAACCGCATTGGCAGGCTTTCGCGGTACTTTGCCGCAACA
TACCGTCATCCGCCACATCCGCCGCTTCTTAGGCAGCGAAAGCCAAGCAGGATTCCTGCGCGGCGGCATCACCTTTTGCA
GCATGGTGCCGATGAGGAGCCTGCCGTTTAAAGTTATCTGCCTCTTGGGGTTGAACGACGGCGATTTCCCGCGCAACACC
AAAGCCGCCGTATTCGACCTGATTGCCAAACACCCGCAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTTTT
CCTCGAAGCCATCATCAGCGCGCGCGACATCCTTTATCTCTCCTACGTCGGCCGCAGCATCCGCAACGACGACGAACTCG
CCCCGTCCGCCCTCGTCAGCGAACTCATCGACACCGTCGCCGCCATGACCGGACGGCGCAGTAAAGAGCTGGCGGAACAC
TGGGTCGAACAACATCCCCTGCAACCGTTCTCACACCGCTATTTCATCGCAGACAAAATTTCAGACGACCTCTTCAGCAC
GCGGCAGGACTACGCCGAAGCCCTCAACCGCCCGCGCGAACAGGTGCGTCCGTTTTTCAGCGAAGCCCTCGAAGAAAACA
CCCCCGTCCCGACCGTCTGGCAGGACGACTTCATCCGCTTCTGGAAAAATCCCGTCAAAGCATGGCTGCAACAAACCTTG
GGCTGGCGCGAACCCTATCGCGACGAAGCATGGGAATCCGCCGAACCCTTCGAGCCGCAACGCGCCGACAAAATCGCCGC
CGCCTATCTCGACGCCCGCCGCCACAACCAAGACTTTCAAGAAACCGCCGTCCGCCTCGACGCCGAAAGCCTGTTGCCCG
CCGGTGAACTGGGTAAATTGTGGCAGCAGAATTTCCAAGCCGCCGCCAAACGTATAGACGGCGCATTGCTGCAAAGCCCC
AAACTGCCGCCTTTCGCCTACGAAATCCCGTTCGACGGACAAACCCTGCAAGGCAGCCTCGGCAACCTTTACCAATGCGG
CCAAGTGATCTACCTCGACTGCAAACCCAACGCCCCGCAACGCATCGCCCTCCTGCTCGAACATTTAATCTTTTGCGCGG
TAGGGTCGTCTGAAACCGAGACCCGTCAAACTTATATCGTTCAGCCAGAAGAAACAACGCTTTATCCCGAAATCCCCGGC
AGCCACGCACAACAAATGCTGCAAAAATGGCTGACGTTCTTCAACCTCGGACAAACGCGCCCGCTGCCTTTCTTCGCCAA
AACCAGCCTCGCCGCCGCCGAAGCCTACGGCAAAAAACAGAGCTGGGATGATGCCCTGAACAAAGCCAGGGAAAGCTATC
ACGGCAATAAAGTCAGCAAAGGCCAAAAAGACTATACCGAAGTCGCTTTAGTGTTCGGCAACGAAGATACCGAGCCGGTA
GAAGGAGCGTTGTTCCAAAGCTTGGTGGAAGAGCTGTTGATACCGCTGCTGGACGCGGTAAAGGAAGAATCGTCCGATAC
GGCATAG

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)

RecC C-terminal domain (RecC_C)

(780-995)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

72.965

100

0.73

Multiple sequence alignment