Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OB_RS02920 Genome accession   NC_004193
Coordinates   572291..573247 (+) Length   318 a.a.
NCBI ID   WP_011064942.1    Uniprot ID   Q8ESS8
Organism   Oceanobacillus iheyensis HTE831     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 567291..578247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB_RS02900 (OB0535) - 568547..569371 (+) 825 WP_011064938.1 aldo/keto reductase -
  OB_RS02905 (OB0536) - 569474..570022 (-) 549 WP_011064939.1 HD domain-containing protein -
  OB_RS02910 (OB0537) fni 570402..571451 (+) 1050 WP_011064940.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  OB_RS02915 (OB0538) - 571601..572056 (+) 456 WP_011064941.1 DUF2188 domain-containing protein -
  OB_RS02920 (OB0539) ceuB 572291..573247 (+) 957 WP_011064942.1 ABC transporter permease Machinery gene
  OB_RS02925 (OB0540) - 573234..574190 (+) 957 WP_011064943.1 iron chelate uptake ABC transporter family permease subunit -
  OB_RS02930 (OB0541) - 574187..574963 (+) 777 WP_011064944.1 ABC transporter ATP-binding protein -
  OB_RS02935 (OB0542) - 575177..576205 (+) 1029 WP_011064945.1 siderophore ABC transporter substrate-binding protein -
  OB_RS02940 (OB0543) - 576373..577089 (+) 717 WP_011064946.1 DsbA family oxidoreductase -
  OB_RS02945 (OB0544) - 577334..578062 (+) 729 WP_011064947.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34791.00 Da        Isoelectric Point: 9.7352

>NTDB_id=22324 OB_RS02920 WP_011064942.1 572291..573247(+) (ceuB) [Oceanobacillus iheyensis HTE831]
MKLWILIIITVILSFVSLFIGAIDIKVTDLLDWESDKTQTFLISRVPRLMAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVVFSFAFALIGTLVFMQILDRIKFKDAIFVPLIGIMYGNILSSITTFFAYEADLL
QNISSWLMGSFTLVIAGRYELLYVSVPAVILAYIYANKFTVAGMGEEFAKNLGLSYKVVLNIGLVLVAIIATTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVMGVVFLLVCDIIGRIVVHPFEIPVNVTVAVIGSAIFLIMLFRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=22324 OB_RS02920 WP_011064942.1 572291..573247(+) (ceuB) [Oceanobacillus iheyensis HTE831]
ATGAAGTTATGGATATTAATTATTATTACTGTAATCTTGTCATTTGTTTCTCTTTTCATAGGAGCAATTGATATCAAGGT
AACGGATTTACTAGATTGGGAGTCTGATAAGACCCAAACATTCCTCATTAGTCGGGTACCTCGTTTAATGGCAATTATTT
TGGCTGGTGCAGGAATGAGTATCGCAGGATTAATAATGCAATCGCTTAGTAGAAATAAATTTGTCTCACCAACTACTGCG
GGTACTTTAGATGCAGCTAAACTTGGAATATTAATATCCATGTTGTTTTTTACAAATGTTACATACACACAACAAGTAGT
TTTTAGTTTTGCGTTTGCCTTAATTGGAACGCTCGTCTTTATGCAAATATTAGATCGTATTAAATTTAAAGATGCAATAT
TTGTTCCGTTAATTGGTATCATGTATGGAAATATTTTATCTTCAATTACAACGTTTTTTGCATATGAAGCTGACCTGCTC
CAAAATATATCATCTTGGTTAATGGGGAGTTTTACATTAGTCATTGCTGGTCGTTATGAGTTGTTATATGTAAGTGTTCC
AGCTGTTATTTTGGCATATATATATGCGAATAAATTTACAGTTGCGGGCATGGGTGAAGAATTTGCAAAGAATTTAGGAT
TGAGTTATAAAGTTGTACTTAATATCGGACTTGTACTTGTCGCTATTATTGCAACAACTGTTGTACTTACTGTTGGTGTC
ATACCGTTTCTAGGATTAATTGTTCCAAATATTGTTTCTCTGTATTTAGGAGATAACTTAAGGAAAACAATTCCACATAC
AGCAGTAATGGGAGTGGTGTTCTTACTAGTATGCGATATTATAGGACGTATTGTAGTTCATCCGTTTGAGATCCCTGTAA
ACGTAACTGTAGCAGTTATCGGTAGTGCGATCTTCTTAATCATGTTATTTAGGGGGAGAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8ESS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.371

0.531

Multiple sequence alignment