Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OB_RS00630 Genome accession   NC_004193
Coordinates   114315..115688 (+) Length   457 a.a.
NCBI ID   WP_011064497.1    Uniprot ID   Q8EU04
Organism   Oceanobacillus iheyensis HTE831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 109315..120688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB_RS00610 (OB0090) - 109439..109906 (+) 468 WP_011064493.1 CtsR family transcriptional regulator -
  OB_RS00615 (OB0091) - 109929..110486 (+) 558 WP_011064494.1 UvrB/UvrC motif-containing protein -
  OB_RS00620 (OB0092) - 110483..111547 (+) 1065 WP_011064495.1 protein arginine kinase -
  OB_RS00625 (OB0093) clpC 111692..114121 (+) 2430 WP_011064496.1 ATP-dependent protease ATP-binding subunit ClpC -
  OB_RS00630 (OB0094) radA 114315..115688 (+) 1374 WP_011064497.1 DNA repair protein RadA Machinery gene
  OB_RS00635 (OB0095) - 115771..116862 (+) 1092 WP_041544400.1 PIN/TRAM domain-containing protein -
  OB_RS00640 (OB0096) gltX 116986..118455 (+) 1470 WP_011064499.1 glutamate--tRNA ligase -
  OB_RS00645 (OB0098) cysE 119076..119756 (+) 681 WP_011064501.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50241.73 Da        Isoelectric Point: 6.9006

>NTDB_id=22323 OB_RS00630 WP_011064497.1 114315..115688(+) (radA) [Oceanobacillus iheyensis HTE831]
MAKRKTKFVCQECGYESAKWMGKCPACHQWNTMVEEIDPASVKGRTGYATSTTSAGKPEKITAIESKKEPRITTKMREFN
RVLGGGIVLGSLVLIGGDPGIGKSTLLLQISAQLAEKDMSVLYVSGEESTRQTKLRADRLDITTDQLYVLSETNLYDISK
QVEEVKPSFVVIDSIQTIFKEEVTSAPGSVSQVRECTMELMKIAKSNGIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFE
GERHHTYRILRGVKNRFGSTHEMGIFEMKEEGLREVMNPSEIFLEERSEGAAGSTVVASMEGTRTVLVEIQALISPTSFG
NPRRTATGIDHNRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLALAVSIASSFRDQPTNPNDIFVGEVGLTG
EIRRVSRIEQRVQEAAKLGFKRVICPKNNLDGWNYPSGIEVIGVSSVQEALDIGLRH

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=22323 OB_RS00630 WP_011064497.1 114315..115688(+) (radA) [Oceanobacillus iheyensis HTE831]
TTGGCAAAAAGAAAAACAAAATTTGTATGTCAGGAATGTGGGTATGAATCAGCTAAATGGATGGGGAAATGTCCGGCTTG
TCATCAATGGAATACCATGGTGGAGGAAATAGATCCAGCCTCAGTAAAAGGTCGGACAGGCTATGCTACTAGTACGACAT
CTGCAGGTAAGCCTGAAAAAATCACAGCCATTGAATCCAAAAAAGAACCTAGAATCACTACAAAAATGAGAGAGTTCAAC
AGAGTTCTGGGAGGCGGCATTGTACTAGGCTCACTGGTTTTAATTGGAGGAGATCCGGGTATTGGTAAATCGACACTTTT
ACTCCAAATATCCGCTCAGTTAGCAGAAAAAGATATGTCAGTACTTTATGTTTCTGGAGAGGAATCTACTCGCCAAACAA
AATTACGAGCAGATCGACTCGATATTACAACAGATCAGTTATATGTTTTATCAGAAACAAATTTATATGATATTAGTAAA
CAGGTGGAAGAAGTAAAACCTTCCTTTGTGGTTATCGATTCGATACAAACCATATTTAAAGAAGAGGTAACGAGCGCTCC
AGGAAGTGTTTCTCAAGTACGTGAATGTACAATGGAGCTTATGAAAATAGCAAAATCAAATGGGATACCTATTTTTATTG
TTGGACATGTAACGAAAGAAGGTTCCATAGCTGGTCCTCGGTTATTAGAGCATATGGTAGATGCTGTTCTGTATTTTGAA
GGCGAGCGACATCACACATATCGTATATTACGAGGAGTAAAGAACCGTTTTGGTAGTACGCATGAAATGGGAATATTTGA
GATGAAAGAAGAAGGATTACGAGAAGTTATGAATCCGTCTGAGATATTCCTAGAAGAGCGGTCAGAAGGGGCAGCAGGAT
CAACAGTTGTGGCATCGATGGAAGGAACAAGAACGGTATTGGTAGAAATACAAGCATTAATTTCTCCTACTAGTTTCGGA
AATCCACGTCGTACCGCAACAGGTATAGACCACAATCGTGTACCACTATTAATGGCTGTTTTAGAAAAGCGTGTGGGCTT
GATGCTTCAAAATCAAGACGCATATATAAAAGTTGCTGGCGGGGTAAAGTTAGATGAGCCAGCTATTGACCTTGCATTAG
CTGTAAGTATCGCATCTAGCTTTCGAGATCAACCAACAAATCCGAATGATATTTTTGTAGGTGAAGTTGGTTTAACTGGT
GAAATTAGAAGGGTTTCTCGAATTGAACAGCGTGTACAAGAAGCTGCAAAATTAGGGTTTAAACGCGTAATATGTCCAAA
GAACAATTTGGATGGCTGGAATTATCCTAGTGGAATTGAAGTCATCGGTGTATCAAGTGTACAAGAGGCTTTAGATATTG
GATTACGTCATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-429)

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8EU04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75

99.781

0.748
  radA Streptococcus pneumoniae Rx1

62.971

98.687

0.621
  radA Streptococcus pneumoniae D39

62.971

98.687

0.621
  radA Streptococcus pneumoniae R6

62.971

98.687

0.621
  radA Streptococcus pneumoniae TIGR4

62.971

98.687

0.621
  radA Streptococcus mitis SK321

62.971

98.687

0.621
  radA Streptococcus mitis NCTC 12261

62.971

98.687

0.621

Multiple sequence alignment