Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   A6J87_RS00985 Genome accession   NZ_CP020451
Coordinates   218349..218651 (-) Length   100 a.a.
NCBI ID   WP_073950175.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 213349..223651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS00970 (A6J87_00965) - 215091..215990 (-) 900 WP_064523419.1 Rpn family recombination-promoting nuclease/putative transposase -
  A6J87_RS00975 (A6J87_00970) - 216154..217848 (-) 1695 WP_073950179.1 DUF2075 domain-containing protein -
  A6J87_RS00980 (A6J87_00975) - 217858..218187 (-) 330 WP_070846935.1 nucleotide pyrophosphohydrolase -
  A6J87_RS00985 (A6J87_00980) HI0659 218349..218651 (-) 303 WP_073950175.1 helix-turn-helix domain-containing protein Machinery gene
  A6J87_RS00990 (A6J87_00985) - 218653..219006 (-) 354 WP_073950173.1 type II toxin-antitoxin system RelE/ParE family toxin -
  A6J87_RS00995 (A6J87_00990) - 219244..220008 (-) 765 WP_073950171.1 SDR family NAD(P)-dependent oxidoreductase -
  A6J87_RS01000 (A6J87_00995) - 220040..221197 (-) 1158 WP_080611428.1 Mbeg1-like protein -
  A6J87_RS01005 (A6J87_01000) - 221307..221933 (+) 627 WP_080610400.1 Pr6Pr family membrane protein -
  A6J87_RS01010 (A6J87_01005) - 221970..222812 (-) 843 WP_080611429.1 Cof-type HAD-IIB family hydrolase -
  A6J87_RS01015 (A6J87_01010) - 222964..223353 (+) 390 WP_080611232.1 sodium transporter -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10993.95 Da        Isoelectric Point: 10.0976

>NTDB_id=223219 A6J87_RS00985 WP_073950175.1 218349..218651(-) (HI0659) [Streptococcus salivarius strain FDAARGOS_259]
MVREKNPAIGSSWDDLQKTIFTKEEIAASELRVALMLEIIDARKKQGISQKKLEELSGVKQPVIARMETGKTAPQLDTVL
KILASLGKTLAVVPLDSHVK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=223219 A6J87_RS00985 WP_073950175.1 218349..218651(-) (HI0659) [Streptococcus salivarius strain FDAARGOS_259]
ATGGTTCGAGAAAAGAATCCAGCAATTGGAAGTAGTTGGGATGATTTACAGAAAACTATTTTCACTAAAGAGGAAATCGC
GGCAAGTGAACTCCGTGTTGCACTGATGCTTGAGATTATTGATGCTCGTAAAAAACAAGGTATTTCCCAAAAGAAACTTG
AAGAGTTAAGTGGTGTCAAACAACCTGTTATCGCACGTATGGAGACTGGGAAAACGGCACCCCAGTTAGATACGGTTCTT
AAAATCCTAGCAAGTCTAGGAAAGACATTGGCGGTAGTCCCACTTGACTCCCATGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.92

87

0.53

Multiple sequence alignment