Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A6J85_RS06735 Genome accession   NZ_CP020450
Coordinates   1346530..1348332 (+) Length   600 a.a.
NCBI ID   WP_082307461.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341530..1353332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS06715 (A6J85_06635) - 1343116..1343433 (+) 318 WP_060554151.1 PTS cellobiose transporter subunit IIA -
  A6J85_RS06720 (A6J85_06640) - 1343461..1343946 (+) 486 WP_061596268.1 hypothetical protein -
  A6J85_RS06725 (A6J85_06645) celB 1343967..1345322 (+) 1356 WP_061593541.1 PTS cellobiose transporter subunit IIC -
  A6J85_RS06730 (A6J85_06650) coiA 1345416..1346369 (+) 954 WP_082307460.1 competence protein CoiA Machinery gene
  A6J85_RS06735 (A6J85_06655) pepF 1346530..1348332 (+) 1803 WP_082307461.1 oligoendopeptidase F Regulator
  A6J85_RS06740 (A6J85_06660) - 1348334..1349020 (+) 687 WP_061596263.1 O-methyltransferase -
  A6J85_RS06745 (A6J85_06665) prsA 1349223..1350152 (+) 930 WP_012130637.1 peptidylprolyl isomerase PrsA -
  A6J85_RS06750 (A6J85_06670) - 1350381..1350866 (+) 486 WP_082307462.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69400.39 Da        Isoelectric Point: 4.4968

>NTDB_id=223202 A6J85_RS06735 WP_082307461.1 1346530..1348332(+) (pepF) [Streptococcus gordonii strain FDAARGOS_257]
MAKQRNEIEEKYTWDLSTIFPTDEAFETELAQVSEELKNASNLAGHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDKLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPVVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIALRAKILGISDLKMYDLYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=223202 A6J85_RS06735 WP_082307461.1 1346530..1348332(+) (pepF) [Streptococcus gordonii strain FDAARGOS_257]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACATGGGATTTAAGTACGATTTTCCCTACAGATGAAGCCTTTGA
GACTGAACTTGCACAGGTTTCTGAAGAATTAAAAAATGCAAGCAATCTAGCAGGACATCTGCTGGATTCGGCAGAAAGTC
TTTTGACAACAACGGAAATTCAATTAGACTTGATGCGCCGTATTGAGAAACTTTATTCCTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTAGCAAAATATCAGGAATACCAAGCTAAAGGAATGACTATTTATAGTGAGTTTGGCCAAACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGATCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACCT
ATCAACATTATTTTGATAAGCTTTTGCAGAAGAAGGAACACATCCTGACCCAGCGTGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTTTTTCCGGTGGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTGACACATGGGAACTATATTTCTCTAGTAGAGTCTAAAAATCGAGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGTGTATATGAGCAGTATCAGCATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTTCAA
AATTACAACGCGAAAGTCCGCAAGTTCTCATCTGCCCGTGAGGCTGCTTTATCGGCTAACTTTATCCCGGAAAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGACAAACACCTTCCTCTGTTACAACGTTATATTGCCTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTACGATTTGTACACGCCTTTATCAGAAACAGATTACAAGTTCACTTATGAAGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCAATTTTGGGTGAGGATTATTTGAGTCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGTAAGCGCTCAGGAGCATACTCAGGTGGCTCTTATGATACCAATGCTTTTATGTTGCTCAACT
GGCAGGATACGCTGGACAATCTCTTTACCTTGGTGCACGAGACAGGCCACAGTATGCACTCCAGCTATACTCGTGAGACC
CAGCCTTATGTTTACGGAGACTATTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCCTGACAGAGAA
GCTCTTGGAAGAAGTAGAAGACGATGCTACTCGCTTTGCGATTCTTAATCACTTTTTGGATGGCTTTAGAGGAACGGTCT
TCCGTCAAACTCAGTTTGCTGAATTTGAGCATGCTATCCACAAGGCTGACCAAGAAGGACAAGTGTTGACTAGCGAGTTT
CTCAATGAGCTATATGCAGACTTAAACGAGAAATACTACGGCTTGAAAAAAGAAGACAATCCGCAGATTCAGTACGAATG
GGCACGCATTCCTCACTTCTACTATAATTATTATGTTTTCCAATACTCGACAGGATTTGCGGCCGCTTCGGCCTTGGCCG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAGTATCTGGATTATCTCAAAGCTGGGAACTCTGACTATCCGCTC
AATGTCATTAAAAAGGCAGGTGTGGATATGGAAAAAGAAGACTATCTAAATGCTGCCTTTGCAGTCTTCGAACGCCGCTT
GGATGAATTTGAAGCTTTGGTAGAAAAGTTGGGATTAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.456

99.333

0.68

Multiple sequence alignment