Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   A6J85_RS06355 Genome accession   NZ_CP020450
Coordinates   1261793..1262503 (-) Length   236 a.a.
NCBI ID   WP_046165239.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1256793..1267503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS06340 (A6J85_06270) - 1257666..1259309 (+) 1644 WP_082307437.1 phosphoenolpyruvate carboxykinase (ATP) -
  A6J85_RS06345 (A6J85_06275) - 1259401..1260741 (+) 1341 WP_082307438.1 hemolysin family protein -
  A6J85_RS06350 (A6J85_06280) - 1260973..1261503 (+) 531 WP_225791188.1 hypothetical protein -
  A6J85_RS06355 (A6J85_06285) treR 1261793..1262503 (-) 711 WP_046165239.1 trehalose operon repressor Regulator
  A6J85_RS06360 (A6J85_06290) treP 1262683..1264692 (+) 2010 WP_082307439.1 PTS system trehalose-specific EIIBC component -
  A6J85_RS06365 (A6J85_06295) treC 1264828..1266453 (+) 1626 WP_082307440.1 alpha,alpha-phosphotrehalase -

Sequence


Protein


Download         Length: 236 a.a.        Molecular weight: 27697.82 Da        Isoelectric Point: 9.3050

>NTDB_id=223197 A6J85_RS06355 WP_046165239.1 1261793..1262503(-) (treR) [Streptococcus gordonii strain FDAARGOS_257]
MKKYQQLFKLIEQDILSEKYPVGEFLPSENELTQIYKVSRDTVRKALEQLQKEGLIQKFKGQGSKIVKQEHINFPISNLT
SYQELVLQNKLDSKTNVISLEKITVDKKLAKLTGFPEYRLVWRIVRQRVVDQVASVLDIDYLDKELVPTMTREIAEHSIY
HFIENDLGLSIDYAKKEITIDHATSRDKILLDIERENHVVSVKSQVYLANGQQFQFTDSRHKLDKFRFVDFAKRHN

Nucleotide


Download         Length: 711 bp        

>NTDB_id=223197 A6J85_RS06355 WP_046165239.1 1261793..1262503(-) (treR) [Streptococcus gordonii strain FDAARGOS_257]
ATGAAGAAATACCAACAATTATTTAAACTAATCGAGCAAGATATCCTGAGCGAGAAATACCCCGTTGGTGAATTTTTGCC
AAGCGAGAATGAATTAACTCAGATTTATAAAGTCAGCCGTGATACTGTCCGAAAGGCTCTGGAGCAACTTCAAAAAGAAG
GATTAATCCAAAAATTTAAGGGACAAGGATCCAAAATCGTCAAGCAGGAACACATCAATTTTCCAATCTCCAATCTGACT
AGCTACCAGGAACTCGTCCTACAAAATAAACTAGACTCTAAAACCAATGTCATCAGCCTAGAAAAGATAACCGTAGATAA
AAAACTTGCTAAGCTAACTGGTTTTCCGGAATATCGCTTGGTTTGGCGAATTGTTCGACAAAGAGTTGTTGATCAAGTTG
CTTCTGTCCTTGATATTGATTATTTAGATAAAGAGCTTGTTCCTACGATGACGAGAGAAATTGCAGAGCATTCCATCTAT
CATTTCATTGAAAATGATCTTGGACTTAGCATCGACTATGCTAAAAAGGAAATCACCATTGATCATGCGACCAGTCGAGA
TAAAATTTTGCTCGATATTGAGAGAGAAAACCATGTCGTTTCCGTCAAATCTCAGGTTTATTTAGCGAACGGGCAGCAAT
TTCAGTTCACAGACAGCAGACACAAACTTGATAAATTTCGCTTTGTTGATTTTGCCAAAAGGCACAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.576

0.644


Multiple sequence alignment