Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6J85_RS03045 Genome accession   NZ_CP020450
Coordinates   612630..613997 (-) Length   455 a.a.
NCBI ID   WP_061596262.1    Uniprot ID   A0AB35FRQ5
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607630..618997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS03025 (A6J85_02995) - 608194..609393 (-) 1200 WP_061601651.1 argininosuccinate synthase -
  A6J85_RS03030 (A6J85_03000) gltX 609569..611026 (-) 1458 WP_082307268.1 glutamate--tRNA ligase -
  A6J85_RS03035 (A6J85_03005) - 611176..611670 (-) 495 WP_060553196.1 carbonic anhydrase -
  A6J85_RS03040 (A6J85_03010) - 611807..612517 (-) 711 WP_046164881.1 TIGR00266 family protein -
  A6J85_RS03045 (A6J85_03015) radA 612630..613997 (-) 1368 WP_061596262.1 DNA repair protein RadA Machinery gene
  A6J85_RS03050 (A6J85_03020) - 614036..614479 (-) 444 WP_082307269.1 dUTP diphosphatase -
  A6J85_RS03055 (A6J85_03025) - 614565..615014 (-) 450 WP_002899180.1 8-oxo-dGTP diphosphatase -
  A6J85_RS03065 (A6J85_03030) - 615278..615967 (-) 690 WP_045634457.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A6J85_RS03070 (A6J85_03035) - 616146..617966 (-) 1821 WP_404827000.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49760.11 Da        Isoelectric Point: 5.7873

>NTDB_id=223157 A6J85_RS03045 WP_061596262.1 612630..613997(-) (radA) [Streptococcus gordonii strain FDAARGOS_257]
MTIAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQIIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=223157 A6J85_RS03045 WP_061596262.1 612630..613997(-) (radA) [Streptococcus gordonii strain FDAARGOS_257]
ATTACCATCGCTAAGAAAAAAACAACCTTTGTGTGTCAAAATTGTGAATATCATTCGCCCAAGTATCTAGGCCGCTGTCC
TAATTGTGGAGCGTGGTCTTCTTTTGTTGAGGAAGTAGAGGCTGCAGAAGTCAAGCATGCTCGTGTTTCCTTGACAGGTG
AAAAGACTCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAATCGGACCAAGACGGAAATGGACGAGTTTAAT
CGTGTGCTGGGTGGTGGAGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGGGATCCTGGTATCGGGAAGTCTACCCTGCT
TCTGCAAGTATCAACCCAGCTTTCTCATCAGGGCACCGTCCTTTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGT
TGCGGGCGGAACGCCTCGGTGATATTGACAGTGAATTTTACCTCTACGCTGAGACCAATATGCAAAATATCCGCACAGAG
ATTGAGAAAATCAAGCCAGATTTTCTGATTATCGACTCTATACAGACGGTGATGTCGCCGGAAATTTCCAGTGTCCAAGG
CTCTGTCTCTCAAGTCCGAGAGGTGACAGCCGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTAGCAGGTCCTCGAACTTTGGAGCATATGGTGGATACCGTGCTTTATTTTGAGGGC
GAACGTCAGCATACTTTCCGTATCTTGAGAGCAGTCAAGAACCGTTTTGGCTCGACCAATGAGATTGGCATTTTTGAGAT
GCAATCGGGGGGGCTAGTTGAGGTTGTCAATCCCAGTGAAGTCTTTCTAGAAGAGCGTCTGGACGGCGCGACAGGCTCTT
CTATCGTCGTGACTATGGAAGGAACGCGGCCGATTTTGGCAGAGGTGCAGGCTTTGGTGACACCGACCATGTTTGGCAAT
GCCAAGCGAACCACGACTGGGCTGGACTTTAACCGAGCCAGCCTTATCATGGCAGTTTTGGAAAAAAGGGCGGGGCTCCT
CCTGCAAAATCAAGATGCCTACCTCAAATCAGCTGGTGGTGTCAAGCTAGATGAGCCAGCCATTGATTTGGCGGTAGCGG
TAGCCATTGCTTCTAGCTACAAGGATTTGCCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGTGAA
ATCCGTCGAGTCAATCGCATCGAGCAGCGCATCAATGAAGCAGCAAAGCTGGGCTTTACCAAAGTCTACGCTCCTAAAAA
TTCTCTGAACGGCCTCAAAGTTCCAGATAATATTCAAATCATTGGTGTGACAACGATTGGGGAAGTCTTAAAGAAAGTAT
TTTCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.17

99.56

0.908
  radA Streptococcus pneumoniae Rx1

90.949

99.56

0.905
  radA Streptococcus pneumoniae D39

90.949

99.56

0.905
  radA Streptococcus pneumoniae R6

90.949

99.56

0.905
  radA Streptococcus pneumoniae TIGR4

90.949

99.56

0.905
  radA Streptococcus mitis SK321

90.949

99.56

0.905
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment