Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   A6J82_RS09235 Genome accession   NZ_CP020449
Coordinates   1792454..1793263 (-) Length   269 a.a.
NCBI ID   WP_001289498.1    Uniprot ID   X5KFV3
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1787454..1798263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS09220 (A6J82_09230) smc 1787674..1791213 (-) 3540 WP_000478777.1 chromosome segregation protein SMC -
  A6J82_RS09225 (A6J82_09235) rnc 1791221..1791907 (-) 687 WP_000661526.1 ribonuclease III -
  A6J82_RS09230 (A6J82_09240) - 1792083..1792451 (-) 369 WP_000719384.1 YbaN family protein -
  A6J82_RS09235 (A6J82_09245) vicX 1792454..1793263 (-) 810 WP_001289498.1 MBL fold metallo-hydrolase Regulator
  A6J82_RS09240 (A6J82_09250) vicK 1793267..1794616 (-) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  A6J82_RS09245 (A6J82_09255) vicR 1794609..1795319 (-) 711 WP_000722052.1 response regulator YycF Regulator
  A6J82_RS09250 (A6J82_09260) - 1795659..1796414 (+) 756 WP_000053150.1 amino acid ABC transporter ATP-binding protein -
  A6J82_RS09255 (A6J82_09265) - 1796426..1797226 (+) 801 WP_000946171.1 transporter substrate-binding domain-containing protein -
  A6J82_RS09260 (A6J82_09270) - 1797239..1797934 (+) 696 WP_000173643.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30273.24 Da        Isoelectric Point: 6.2265

>NTDB_id=223130 A6J82_RS09235 WP_001289498.1 1792454..1793263(-) (vicX) [Streptococcus agalactiae strain FDAARGOS_254]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=223130 A6J82_RS09235 WP_001289498.1 1792454..1793263(-) (vicX) [Streptococcus agalactiae strain FDAARGOS_254]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCCTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment