Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   A6J74_RS16795 Genome accession   NZ_CP020437
Coordinates   2886669..2886953 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. FDAARGOS_235     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2881669..2891953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J74_RS16780 (A6J74_16805) rnmV 2882466..2883023 (-) 558 WP_000692838.1 ribonuclease M5 -
  A6J74_RS16785 (A6J74_16810) - 2883243..2884010 (-) 768 WP_000895828.1 TatD family hydrolase -
  A6J74_RS16790 (A6J74_16815) metG 2884179..2886161 (-) 1983 WP_000159673.1 methionine--tRNA ligase -
  A6J74_RS16795 (A6J74_16820) abrB 2886669..2886953 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  A6J74_RS16800 (A6J74_16825) rsmI 2886974..2887849 (-) 876 WP_000267799.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  A6J74_RS16805 (A6J74_16830) - 2887818..2888108 (-) 291 WP_000414346.1 GIY-YIG nuclease family protein -
  A6J74_RS16810 (A6J74_16835) - 2888095..2888835 (-) 741 WP_001055365.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  A6J74_RS16815 (A6J74_16840) yabA 2888957..2889307 (-) 351 WP_000412058.1 DNA replication initiation control protein YabA -
  A6J74_RS16820 (A6J74_16845) - 2889322..2890149 (-) 828 WP_000272428.1 stage 0 sporulation family protein -
  A6J74_RS16825 (A6J74_16850) holB 2890155..2891138 (-) 984 WP_000754512.1 DNA polymerase III subunit delta' -
  A6J74_RS16830 (A6J74_16855) tmk 2891174..2891800 (-) 627 WP_000677211.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=223056 A6J74_RS16795 WP_000843036.1 2886669..2886953(+) (abrB) [Bacillus sp. FDAARGOS_235]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=223056 A6J74_RS16795 WP_000843036.1 2886669..2886953(+) (abrB) [Bacillus sp. FDAARGOS_235]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTTGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment