Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   A6J74_RS11205 Genome accession   NZ_CP020437
Coordinates   1834600..1838115 (-) Length   1171 a.a.
NCBI ID   WP_000058641.1    Uniprot ID   -
Organism   Bacillus sp. FDAARGOS_235     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829600..1843115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J74_RS11180 (A6J74_11190) gerPD 1829633..1829827 (+) 195 WP_001052804.1 spore germination protein GerPD -
  A6J74_RS11185 (A6J74_11195) - 1829843..1830229 (+) 387 WP_000902321.1 spore germination protein GerPE -
  A6J74_RS11190 (A6J74_11200) gerPF 1830272..1830487 (+) 216 WP_001141566.1 spore germination protein GerPF -
  A6J74_RS11195 (A6J74_11205) - 1830576..1830854 (-) 279 WP_000224035.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  A6J74_RS11200 (A6J74_11210) addA 1830878..1834603 (-) 3726 WP_000572319.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  A6J74_RS11205 (A6J74_11215) addB 1834600..1838115 (-) 3516 WP_000058641.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  A6J74_RS11210 (A6J74_11220) lepB 1838232..1838795 (-) 564 WP_000751915.1 signal peptidase I -
  A6J74_RS11215 (A6J74_11225) - 1838978..1839571 (-) 594 WP_000347508.1 TVP38/TMEM64 family protein -
  A6J74_RS11225 (A6J74_11235) - 1840080..1840661 (-) 582 WP_000444438.1 competence protein ComK -
  A6J74_RS11230 (A6J74_11240) - 1840952..1841137 (+) 186 WP_000391363.1 hypothetical protein -
  A6J74_RS11235 (A6J74_11245) cspA 1841275..1841478 (-) 204 WP_000301522.1 RNA chaperone/antiterminator CspA -
  A6J74_RS11240 (A6J74_11250) - 1841757..1842251 (+) 495 WP_000208488.1 DUF6584 family protein -
  A6J74_RS11245 (A6J74_11255) - 1842271..1843062 (+) 792 WP_000073825.1 phosphotransferase -

Sequence

Protein


Download         Length: 1171 a.a.        Molecular weight: 134484.75 Da        Isoelectric Point: 5.1137

>NTDB_id=223047 A6J74_RS11205 WP_000058641.1 1834600..1838115(-) (addB) [Bacillus sp. FDAARGOS_235]
MSLRLVIGRAGSGKSTLCLREVQEALKQRPRGKTILYLVPEQMTFQTQQALIESEDVRGSIRAQVFSFSRLAWKVLQEVG
GASRLHIDEAGVHMLLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLA
NKVYDLQLLYDDFERALIGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDE
KTLAQPVNELDLFYETTLTYEKIKQVAREEKIEIEKTIPLMEQPRFHSPALAHLETHYEARPNEKYYDEASVTISTAANL
RAEVEGVAREIRRLVADETYRYRDIAVLLRNGESYYDVMQTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRY
DAVFRCVKTELLYPLDVRKEMMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDIEREMEEKINRLRD
VVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEK
MSLSMFTDVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIEL
APTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDLSRSEQISYVATP
EVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRME
LFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQIL
LSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVIGRIDRVDKAEDENG
TFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTTNAQTWMKKGHAASPAGVLYFHIHNPIVEMKGDASEAEIEKEIL
KKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSSIASEQEFNVLQKYVHHTFENIGKDITEGVIDIAP
YKKGNKAACTFCNFKSVCQFDESLEDNQFRTLKDMKDSEAMEKIREEVDGE

Nucleotide


Download         Length: 3516 bp        

>NTDB_id=223047 A6J74_RS11205 WP_000058641.1 1834600..1838115(-) (addB) [Bacillus sp. FDAARGOS_235]
ATGTCACTTCGATTGGTGATTGGTAGAGCGGGAAGTGGAAAGAGTACACTTTGTTTACGAGAAGTGCAAGAAGCGTTAAA
ACAGCGCCCGAGAGGCAAAACAATATTATATCTTGTGCCAGAACAGATGACATTCCAGACGCAGCAGGCGTTAATTGAAA
GTGAGGATGTAAGAGGTTCTATTCGGGCACAAGTTTTTAGTTTTTCACGATTAGCTTGGAAGGTGTTGCAAGAAGTTGGC
GGAGCGAGTCGTCTTCATATTGATGAAGCGGGTGTGCATATGTTACTTCGTAAAATTGTAGAATCTCGTAAAGATGGATT
ATCGGTGTTCCAAAAAGCAGCAGAGCAAAACGGTTTCTTTGAACATCTTGGCAGTATGATTGCGGAGTTTAAACGTTACA
ATGTGACGCCATCTAACGTATATGAAATGTGGCAACAATTAGATGCGCATAGTAGCAGTGCTGAGCAAAAGTTATTAGCG
AATAAAGTATATGATTTACAGCTATTATATGATGATTTTGAACGTGCTTTAATCGGGAAATATTTAGATTCAGAAGACTA
TTTACAATTGCTAGTGGAAAAGCTTCCGCAGTCTGAGTATGTAAATGGTGCTGAAATTTATATAGATGGGTTTCATTCAT
TTTCTCCGCAAGAACTTGAAATTGTAAGACAGCTCATGATTTGTGGAGCGAGAGTCACAATTACGTTAACGATAGATGAA
AAAACATTAGCGCAGCCAGTGAATGAACTGGATTTATTTTATGAAACGACGTTAACATATGAAAAAATAAAACAAGTAGC
GCGTGAAGAGAAAATAGAAATTGAAAAAACAATTCCACTTATGGAACAACCGCGTTTTCATTCTCCGGCATTAGCTCATT
TAGAAACGCATTATGAAGCGCGTCCGAATGAAAAGTATTATGATGAAGCAAGTGTAACAATTAGTACAGCGGCGAATTTA
CGAGCTGAAGTAGAAGGGGTTGCTCGTGAAATTCGTAGACTTGTCGCGGATGAAACGTATCGTTATCGAGATATTGCAGT
ACTTCTTCGTAACGGGGAAAGTTATTACGATGTGATGCAAACGTTATTTACAGATTATAATATTCCACACTTCATCGATG
AAAAACGCCCGATGTCACATCATCCATTAGTAGAGTGTATTCGTTCTGCCTTAGAAATTATTAGCGGAAATTGGCGTTAT
GACGCGGTGTTTCGCTGCGTGAAAACAGAGCTTTTATATCCATTAGACGTAAGGAAAGAAATGATGCGTGAAGAGATGGA
TGAGTTCGAAAACTACTGTTTAGCGTACGGTGTACAAGGGAAGAGATGGACTTCTGAGGATCCGTGGATGTATCGCCGTT
ACCGTTCACTTGACGATACAAACGGAATGATAACAGATATTGAACGTGAAATGGAAGAGAAAATAAACAGGCTGCGTGAT
GTTGTAAGAACGCCAGTTATTCGCATGCAAAAAAGGTTAAAGCGTGCGGGAACAGTGATGCAAATGTGCGAAGCGGTTTA
CTTATTTTTAGAAGAACTTGACGTTCCAAAGAAGTTAGAAGAATTACGTATACGTGCAGAAGAGAGCGGAGATTTCTTAT
TTGCAACAGACCATGAACAAGTATGGGAAGAAGTAATGAGCCTTCTTGATACGTTTGTAGAAATGCTTGGTGAGGAGAAA
ATGTCACTATCTATGTTCACGGACGTTATGTCGACAGGACTTGAGGCACTTCAATTCGCTAACATTCCGCCATCATTAGA
TCAAGTATTAGTTGCCAATATTGATCACTCCAGGTTATCAGATGTGAAAGCTACGTTTATTATCGGCGTAAATGAAGGAG
TTATTCCAGCAGCACCGATGGATGAAGGGATGCTTTCTGATGAGGAAAGAGAAGTTCTTGGTGCGGCAGGAATTGAACTC
GCGCCAACGACGAGACAAACTTTATTAGAAGAGCAGTTCGTTATGTATCAGATGGTAACGAGAGCGTCTGAGAAATTATA
TATTTCATGCCCACTTGCAGATGAAGAAGGAAAGACATTACTTGCATCTAGCTTTATTAAGAAAATAAAAAGAATGTTCC
CTAATGTGAAAGACTCGTTTATTACGAATGACGTAAACGACTTATCGCGTTCGGAACAAATTTCATACGTAGCAACGCCA
GAAGTGACGTTATCTTATGTCATGCAGCAACTACAAACGTGGAAGCGATACGGATTTGAAGGAAATCTAGATTTTTGGTG
GGACGTCTATAACTTCTACGTCACTTCGGATGAATGGAAACAAAAAAGTAGTCGCGTGTTATCGAGTTTATTCTATCGAA
ATCGTGCGCAGAAACTAAGTACGGTAGTAAGTAGAGATTTATACGGAGATAAAATAAAAGGAAGCGTTTCTCGTATGGAA
CTCTTCAACCGTTGTGCGTACGCTCATTTCGCGCAGCACGGTTTATCGTTAAGAGAGCGTGATATTTTTAAACTAGATGC
ACCAGATATCGGTGAACTATTCCATGCAGCACTGAAGAGAATTGCAGACAGGCTATTACGCGAAAACCGCACTTGGGCGG
ATTTATCAATAAAAGAGTGTGAGCATCTTTCTGTTTTAGTAATAGAAGAAATCGCACCGTTATTACAAAGACAAATTTTA
TTAAGCTCAAATCGTCATTTCTATTTAAAACAAAAACTACAACAAATCATTTTCCGTACGTCAATCATTCTTCGTGAACA
CGCGAAGTCGAGCGGTTTCGTACCAGTTGATTTAGAGGTGCCATTCGGTATGGGCGGTACGGGATCGCTTCCGCCGATGG
AATTCTCATTACCAAATGGTGTGAAGATGGAAGTTATCGGCCGTATTGACCGTGTGGATAAGGCTGAAGATGAAAACGGA
ACATTCCTTCGTATTATTGATTATAAATCAAGTTCAAAAGCGTTAGACTTAACGGAAGTGTATTACGGATTGGCACTTCA
AATGTTAACGTATTTAGATGTCGTTACTACAAATGCACAAACGTGGATGAAAAAAGGCCACGCAGCATCACCTGCTGGTG
TACTGTACTTTCATATTCATAACCCGATTGTTGAAATGAAAGGTGACGCATCTGAAGCTGAAATTGAAAAAGAAATTTTA
AAGAAATTTAAAATGAAAGGCCTCGTACTAGGAGATGCTGACGTTGTTCGTTTAATGGATAACAAACTTTCAACAGGAAG
TTCAGATATTATTTCTGCTGGTCTGAAAAAAGACGGTAGTTTTAGTGCGCGTTCTAGCATTGCAAGTGAGCAAGAGTTTA
ACGTACTGCAAAAATATGTACACCATACGTTTGAAAATATCGGAAAAGACATTACAGAAGGTGTTATTGATATTGCTCCT
TACAAAAAGGGGAATAAAGCGGCATGTACGTTCTGTAACTTCAAATCTGTCTGTCAGTTTGATGAATCACTTGAAGATAA
TCAATTCCGTACGTTAAAAGATATGAAAGATAGTGAAGCGATGGAGAAAATTAGAGAGGAGGTTGACGGAGAATGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(303-669)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(795-1139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

49.317

100

0.494

Multiple sequence alignment